Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
GFRA1P56159 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
GFRA1P56159 PPT1-215ENST00000641471 2368 ntBASIC13.71□□□□□ -0.22
GFRA1P56159 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
GFRA1P56159 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
GFRA1P56159 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC13.7□□□□□ -0.22
GFRA1P56159 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC13.7□□□□□ -0.22
GFRA1P56159 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.7□□□□□ -0.22
GFRA1P56159 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.7□□□□□ -0.22
GFRA1P56159 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.7□□□□□ -0.22
GFRA1P56159 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.7□□□□□ -0.22
GFRA1P56159 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.7□□□□□ -0.22
GFRA1P56159 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 HLA-V-201ENST00000429037 534 ntBASIC13.7□□□□□ -0.22
GFRA1P56159 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.7□□□□□ -0.22
GFRA1P56159 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.7□□□□□ -0.22
GFRA1P56159 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC13.7□□□□□ -0.22
GFRA1P56159 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.7□□□□□ -0.22
GFRA1P56159 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.7□□□□□ -0.22
GFRA1P56159 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.7□□□□□ -0.22
GFRA1P56159 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.7□□□□□ -0.22
GFRA1P56159 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.7□□□□□ -0.22
GFRA1P56159 AC078819.1-201ENST00000547454 765 ntBASIC13.7□□□□□ -0.22
GFRA1P56159 AC012085.1-201ENST00000548270 765 ntBASIC13.7□□□□□ -0.22
GFRA1P56159 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.7□□□□□ -0.22
GFRA1P56159 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC13.7□□□□□ -0.22
GFRA1P56159 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
GFRA1P56159 ENPP7P14-201ENST00000621765 1040 ntBASIC13.7□□□□□ -0.22
GFRA1P56159 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.7□□□□□ -0.22
GFRA1P56159 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC13.7□□□□□ -0.22
GFRA1P56159 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.7□□□□□ -0.22
GFRA1P56159 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC13.7□□□□□ -0.22
GFRA1P56159 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC13.7□□□□□ -0.22
GFRA1P56159 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
GFRA1P56159 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC13.7□□□□□ -0.22
GFRA1P56159 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
GFRA1P56159 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.69□□□□□ -0.22
GFRA1P56159 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC13.69□□□□□ -0.22
GFRA1P56159 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.69□□□□□ -0.22
GFRA1P56159 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 AL359258.3-201ENST00000622910 2331 ntBASIC13.69□□□□□ -0.22
GFRA1P56159 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.69□□□□□ -0.22
GFRA1P56159 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
GFRA1P56159 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 AP000845.1-201ENST00000581677 2131 ntBASIC13.69□□□□□ -0.22
GFRA1P56159 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC13.69□□□□□ -0.22
GFRA1P56159 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC13.69□□□□□ -0.22
GFRA1P56159 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC13.69□□□□□ -0.22
GFRA1P56159 AC026954.1-201ENST00000429771 1293 ntBASIC13.69□□□□□ -0.22
GFRA1P56159 BNIP3P42-201ENST00000454982 569 ntBASIC13.69□□□□□ -0.22
GFRA1P56159 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.69□□□□□ -0.22
GFRA1P56159 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.69□□□□□ -0.22
GFRA1P56159 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
GFRA1P56159 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.69□□□□□ -0.22
GFRA1P56159 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.69□□□□□ -0.22
GFRA1P56159 BNIP3P29-201ENST00000598302 571 ntBASIC13.69□□□□□ -0.22
GFRA1P56159 AC011447.5-201ENST00000616168 564 ntBASIC13.69□□□□□ -0.22
GFRA1P56159 AC138951.2-201ENST00000623455 1161 ntBASIC13.69□□□□□ -0.22
GFRA1P56159 AC008687.7-202ENST00000637404 953 ntBASIC13.69□□□□□ -0.22
GFRA1P56159 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms