Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.57□□□□□ -0.08
LIM2P55344 AC023908.3-201ENST00000564211 3047 ntBASIC14.57□□□□□ -0.08
LIM2P55344 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.57□□□□□ -0.08
LIM2P55344 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.57□□□□□ -0.08
LIM2P55344 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.57□□□□□ -0.08
LIM2P55344 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 C1QBPP1-201ENST00000400117 770 ntBASIC14.57□□□□□ -0.08
LIM2P55344 AC104457.1-201ENST00000401024 814 ntBASIC14.57□□□□□ -0.08
LIM2P55344 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.57□□□□□ -0.08
LIM2P55344 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.57□□□□□ -0.08
LIM2P55344 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.57□□□□□ -0.08
LIM2P55344 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.57□□□□□ -0.08
LIM2P55344 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.57□□□□□ -0.08
LIM2P55344 AC124283.3-201ENST00000570869 594 ntBASIC14.57□□□□□ -0.08
LIM2P55344 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.57□□□□□ -0.08
LIM2P55344 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.57□□□□□ -0.08
LIM2P55344 AC133539.2-201ENST00000604757 467 ntBASIC14.57□□□□□ -0.08
LIM2P55344 AC093813.1-201ENST00000605066 256 ntBASIC14.57□□□□□ -0.08
LIM2P55344 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.57□□□□□ -0.08
LIM2P55344 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
LIM2P55344 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
LIM2P55344 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 AL138799.1-201ENST00000448213 1675 ntBASIC14.57□□□□□ -0.08
LIM2P55344 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.57□□□□□ -0.08
LIM2P55344 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.57□□□□□ -0.08
LIM2P55344 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
LIM2P55344 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.57□□□□□ -0.08
LIM2P55344 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.57□□□□□ -0.08
LIM2P55344 NORAD-201ENST00000565493 5339 ntBASIC14.56□□□□□ -0.08
LIM2P55344 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.56□□□□□ -0.08
LIM2P55344 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.56□□□□□ -0.08
LIM2P55344 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.56□□□□□ -0.08
LIM2P55344 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.56□□□□□ -0.08
LIM2P55344 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.56□□□□□ -0.08
LIM2P55344 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.56□□□□□ -0.08
LIM2P55344 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.56□□□□□ -0.08
LIM2P55344 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.56□□□□□ -0.08
LIM2P55344 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 AC004066.1-201ENST00000502488 802 ntBASIC14.56□□□□□ -0.08
LIM2P55344 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.56□□□□□ -0.08
LIM2P55344 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.56□□□□□ -0.08
LIM2P55344 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 SAMD11P1-201ENST00000571429 661 ntBASIC14.56□□□□□ -0.08
LIM2P55344 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.56□□□□□ -0.08
LIM2P55344 AC027307.3-201ENST00000594262 1100 ntBASIC14.56□□□□□ -0.08
LIM2P55344 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.56□□□□□ -0.08
LIM2P55344 WFDC1-204ENST00000613603 549 ntBASIC14.56□□□□□ -0.08
LIM2P55344 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.56□□□□□ -0.08
LIM2P55344 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
LIM2P55344 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
LIM2P55344 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.56□□□□□ -0.08
LIM2P55344 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.56□□□□□ -0.08
LIM2P55344 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.56□□□□□ -0.08
LIM2P55344 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
LIM2P55344 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
LIM2P55344 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LIM2P55344 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 AC013726.1-201ENST00000563747 2285 ntBASIC14.55□□□□□ -0.08
LIM2P55344 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.55□□□□□ -0.08
LIM2P55344 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.55□□□□□ -0.08
LIM2P55344 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
LIM2P55344 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.55□□□□□ -0.08
LIM2P55344 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
LIM2P55344 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.55□□□□□ -0.08
LIM2P55344 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
LIM2P55344 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LIM2P55344 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms