Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.52□□□□□ -0.09
RFX3P48380 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.52□□□□□ -0.09
RFX3P48380 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RFX3P48380 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.52□□□□□ -0.09
RFX3P48380 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
RFX3P48380 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.52□□□□□ -0.09
RFX3P48380 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RFX3P48380 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.52□□□□□ -0.09
RFX3P48380 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RFX3P48380 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.52□□□□□ -0.09
RFX3P48380 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.52□□□□□ -0.09
RFX3P48380 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RFX3P48380 Z97205.2-201ENST00000564697 1639 ntBASIC14.52□□□□□ -0.09
RFX3P48380 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
RFX3P48380 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
RFX3P48380 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
RFX3P48380 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
RFX3P48380 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.51□□□□□ -0.09
RFX3P48380 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.51□□□□□ -0.09
RFX3P48380 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.51□□□□□ -0.09
RFX3P48380 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.51□□□□□ -0.09
RFX3P48380 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
RFX3P48380 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.51□□□□□ -0.09
RFX3P48380 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.51□□□□□ -0.09
RFX3P48380 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.51□□□□□ -0.09
RFX3P48380 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 TSSK5P-201ENST00000423978 907 ntBASIC14.51□□□□□ -0.09
RFX3P48380 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.51□□□□□ -0.09
RFX3P48380 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.51□□□□□ -0.09
RFX3P48380 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.51□□□□□ -0.09
RFX3P48380 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
RFX3P48380 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.51□□□□□ -0.09
RFX3P48380 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.51□□□□□ -0.09
RFX3P48380 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.51□□□□□ -0.09
RFX3P48380 AC135586.1-201ENST00000539323 574 ntBASIC14.51□□□□□ -0.09
RFX3P48380 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.51□□□□□ -0.09
RFX3P48380 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.51□□□□□ -0.09
RFX3P48380 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.51□□□□□ -0.09
RFX3P48380 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.51□□□□□ -0.09
RFX3P48380 AC004461.2-201ENST00000629517 803 ntBASIC14.51□□□□□ -0.09
RFX3P48380 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
RFX3P48380 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
RFX3P48380 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
RFX3P48380 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
RFX3P48380 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 AC022144.1-201ENST00000602255 1580 ntBASIC14.51□□□□□ -0.09
RFX3P48380 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RFX3P48380 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.51□□□□□ -0.09
RFX3P48380 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.51□□□□□ -0.09
RFX3P48380 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
RFX3P48380 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
RFX3P48380 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.5□□□□□ -0.09
RFX3P48380 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.5□□□□□ -0.09
RFX3P48380 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.5□□□□□ -0.09
RFX3P48380 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.5□□□□□ -0.09
RFX3P48380 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.5□□□□□ -0.09
RFX3P48380 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
RFX3P48380 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms