Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CUX1P39880 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
CUX1P39880 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CUX1P39880 KRT8P28-201ENST00000433288 1390 ntBASIC24.97■■□□□ 1.59
CUX1P39880 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CUX1P39880 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
CUX1P39880 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC24.97■■□□□ 1.59
CUX1P39880 RNF165-205ENST00000588679 2904 ntBASIC24.97■■□□□ 1.59
CUX1P39880 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CUX1P39880 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CUX1P39880 FAS-202ENST00000352159 1722 ntTSL 5 BASIC24.97■■□□□ 1.59
CUX1P39880 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC24.97■■□□□ 1.59
CUX1P39880 RPSAP15-201ENST00000448168 861 ntBASIC24.96■■□□□ 1.59
CUX1P39880 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC24.96■■□□□ 1.59
CUX1P39880 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC24.96■■□□□ 1.59
CUX1P39880 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CUX1P39880 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC24.96■■□□□ 1.59
CUX1P39880 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC24.96■■□□□ 1.59
CUX1P39880 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC24.96■■□□□ 1.59
CUX1P39880 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
CUX1P39880 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC24.96■■□□□ 1.59
CUX1P39880 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC24.96■■□□□ 1.59
CUX1P39880 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC24.96■■□□□ 1.59
CUX1P39880 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CUX1P39880 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
CUX1P39880 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC24.96■■□□□ 1.59
CUX1P39880 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC24.96■■□□□ 1.59
CUX1P39880 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC24.96■■□□□ 1.59
CUX1P39880 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CUX1P39880 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC24.96■■□□□ 1.59
CUX1P39880 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
CUX1P39880 IL9RP3-201ENST00000442856 1674 ntBASIC24.96■■□□□ 1.59
CUX1P39880 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC24.96■■□□□ 1.59
CUX1P39880 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
CUX1P39880 REXO1L2P-201ENST00000425429 2069 ntBASIC24.96■■□□□ 1.59
CUX1P39880 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC24.96■■□□□ 1.59
CUX1P39880 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC24.96■■□□□ 1.59
CUX1P39880 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC24.96■■□□□ 1.59
CUX1P39880 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
CUX1P39880 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC24.96■■□□□ 1.59
CUX1P39880 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CUX1P39880 SIGLEC18P-201ENST00000602271 909 ntBASIC24.96■■□□□ 1.59
CUX1P39880 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CUX1P39880 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC24.96■■□□□ 1.59
CUX1P39880 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CUX1P39880 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
CUX1P39880 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
CUX1P39880 LINC02199-201ENST00000506655 2702 ntBASIC24.95■■□□□ 1.59
CUX1P39880 SALL4P5-201ENST00000419001 1760 ntBASIC24.95■■□□□ 1.59
CUX1P39880 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
CUX1P39880 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
CUX1P39880 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.59
CUX1P39880 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC24.95■■□□□ 1.59
CUX1P39880 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
CUX1P39880 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC24.95■■□□□ 1.59
CUX1P39880 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CUX1P39880 AC092850.2-201ENST00000623821 2697 ntBASIC24.95■■□□□ 1.58
CUX1P39880 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CUX1P39880 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC24.95■■□□□ 1.58
CUX1P39880 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC24.95■■□□□ 1.58
CUX1P39880 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC24.95■■□□□ 1.58
CUX1P39880 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CUX1P39880 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC24.95■■□□□ 1.58
CUX1P39880 LYPLA2P1-203ENST00000447689 696 ntBASIC24.95■■□□□ 1.58
CUX1P39880 AC018463.1-201ENST00000456674 917 ntBASIC24.95■■□□□ 1.58
CUX1P39880 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC24.95■■□□□ 1.58
CUX1P39880 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CUX1P39880 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
CUX1P39880 AC005357.2-202ENST00000590507 1060 ntBASIC24.95■■□□□ 1.58
CUX1P39880 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC24.95■■□□□ 1.58
CUX1P39880 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC24.95■■□□□ 1.58
CUX1P39880 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC24.95■■□□□ 1.58
CUX1P39880 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC24.95■■□□□ 1.58
CUX1P39880 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CUX1P39880 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CUX1P39880 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CUX1P39880 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC24.95■■□□□ 1.58
CUX1P39880 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC24.95■■□□□ 1.58
CUX1P39880 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC24.95■■□□□ 1.58
CUX1P39880 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC24.94■■□□□ 1.58
CUX1P39880 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CUX1P39880 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CUX1P39880 AC090502.4-201ENST00000551714 1386 ntBASIC24.94■■□□□ 1.58
CUX1P39880 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CUX1P39880 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CUX1P39880 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CUX1P39880 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC24.94■■□□□ 1.58
CUX1P39880 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC24.94■■□□□ 1.58
CUX1P39880 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC24.94■■□□□ 1.58
CUX1P39880 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC24.94■■□□□ 1.58
CUX1P39880 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CUX1P39880 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC24.94■■□□□ 1.58
CUX1P39880 AC093752.3-201ENST00000567343 901 ntBASIC24.94■■□□□ 1.58
CUX1P39880 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC24.94■■□□□ 1.58
CUX1P39880 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC24.94■■□□□ 1.58
CUX1P39880 AC009145.4-201ENST00000625119 1294 ntBASIC24.94■■□□□ 1.58
CUX1P39880 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CUX1P39880 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC24.94■■□□□ 1.58
CUX1P39880 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
CUX1P39880 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms