Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.64□□□□□ -0.07
SDC1P18827 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.64□□□□□ -0.07
SDC1P18827 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.64□□□□□ -0.07
SDC1P18827 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.64□□□□□ -0.07
SDC1P18827 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 AC023511.2-201ENST00000618803 211 ntBASIC14.64□□□□□ -0.07
SDC1P18827 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.64□□□□□ -0.07
SDC1P18827 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.64□□□□□ -0.07
SDC1P18827 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.64□□□□□ -0.07
SDC1P18827 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.64□□□□□ -0.07
SDC1P18827 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.64□□□□□ -0.07
SDC1P18827 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
SDC1P18827 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.63□□□□□ -0.07
SDC1P18827 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.63□□□□□ -0.07
SDC1P18827 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
SDC1P18827 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
SDC1P18827 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
SDC1P18827 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
SDC1P18827 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
SDC1P18827 MIR943-201ENST00000401286 94 ntBASIC14.63□□□□□ -0.07
SDC1P18827 AC241585.1-201ENST00000433527 519 ntBASIC14.63□□□□□ -0.07
SDC1P18827 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
SDC1P18827 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.63□□□□□ -0.07
SDC1P18827 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.63□□□□□ -0.07
SDC1P18827 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.63□□□□□ -0.07
SDC1P18827 AL391069.4-201ENST00000609583 481 ntBASIC14.63□□□□□ -0.07
SDC1P18827 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.63□□□□□ -0.07
SDC1P18827 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.63□□□□□ -0.07
SDC1P18827 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
SDC1P18827 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
SDC1P18827 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.63□□□□□ -0.07
SDC1P18827 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.63□□□□□ -0.07
SDC1P18827 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.63□□□□□ -0.07
SDC1P18827 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.63□□□□□ -0.07
SDC1P18827 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.63□□□□□ -0.07
SDC1P18827 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.63□□□□□ -0.07
SDC1P18827 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
SDC1P18827 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
SDC1P18827 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SDC1P18827 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.62□□□□□ -0.07
SDC1P18827 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.62□□□□□ -0.07
SDC1P18827 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 LILRP1-201ENST00000444199 1370 ntBASIC14.62□□□□□ -0.07
SDC1P18827 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.62□□□□□ -0.07
SDC1P18827 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.62□□□□□ -0.07
SDC1P18827 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.62□□□□□ -0.07
SDC1P18827 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
SDC1P18827 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
SDC1P18827 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SDC1P18827 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.62□□□□□ -0.07
SDC1P18827 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.62□□□□□ -0.07
SDC1P18827 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
SDC1P18827 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.62□□□□□ -0.07
SDC1P18827 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.62□□□□□ -0.07
SDC1P18827 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.62□□□□□ -0.07
SDC1P18827 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
SDC1P18827 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SDC1P18827 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.62□□□□□ -0.07
SDC1P18827 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.62□□□□□ -0.07
SDC1P18827 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.62□□□□□ -0.07
SDC1P18827 SPDYE18-201ENST00000510091 1050 ntBASIC14.62□□□□□ -0.07
SDC1P18827 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
SDC1P18827 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms