Protein–RNA interactions for Protein: Q9Y296

TRAPPC4, Trafficking protein particle complex subunit 4, humanhuman

Predictions only

Length 219 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4Q9Y296 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 AC044860.1-202ENST00000559481 777 ntBASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 AC009407.1-201ENST00000568958 598 ntBASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 AL109936.8-201ENST00000641772 604 ntBASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 AC007686.3-201ENST00000619017 3487 ntBASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.16□□□□□ -0.14
TRAPPC4Q9Y296 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 AC136759.1-202ENST00000530858 2194 ntBASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 MIR770-201ENST00000390219 98 ntBASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 AC074338.1-201ENST00000416825 156 ntBASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
TRAPPC4Q9Y296 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.15
TRAPPC4Q9Y296 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.15□□□□□ -0.15
TRAPPC4Q9Y296 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
TRAPPC4Q9Y296 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.15□□□□□ -0.15
TRAPPC4Q9Y296 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms