Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM35Q9UPQ4 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC19.84■□□□□ 0.77
TRIM35Q9UPQ4 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM35Q9UPQ4 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM35Q9UPQ4 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM35Q9UPQ4 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM35Q9UPQ4 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM35Q9UPQ4 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 MIR658-201ENST00000385210 100 ntBASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 BOLA2P3-201ENST00000404566 256 ntBASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 AC099336.1-201ENST00000417053 1171 ntBASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 AC234783.1-201ENST00000441761 496 ntBASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM35Q9UPQ4 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM35Q9UPQ4 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM35Q9UPQ4 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM35Q9UPQ4 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM35Q9UPQ4 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC19.83■□□□□ 0.76
TRIM35Q9UPQ4 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM35Q9UPQ4 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC19.83■□□□□ 0.76
TRIM35Q9UPQ4 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
TRIM35Q9UPQ4 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
TRIM35Q9UPQ4 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM35Q9UPQ4 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 AJ011931.1-201ENST00000618749 2492 ntBASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 CLUHP2-201ENST00000426660 1303 ntBASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 KLF2P4-201ENST00000451959 1225 ntBASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 FO681548.1-201ENST00000455617 1132 ntBASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 RNA5SP486-201ENST00000515961 83 ntBASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 AC104989.1-201ENST00000519711 778 ntBASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 AC017083.2-201ENST00000608069 979 ntBASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 COX11-210ENST00000639671 696 ntBASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
TRIM35Q9UPQ4 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM35Q9UPQ4 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms