Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
PCDH9Q9HC56 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 FLJ16779-201ENST00000612722 7638 ntBASIC15.9■□□□□ 0.14
PCDH9Q9HC56 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 AC015922.1-201ENST00000421102 1152 ntBASIC15.9■□□□□ 0.14
PCDH9Q9HC56 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 RPL13P2-201ENST00000440687 659 ntBASIC15.9■□□□□ 0.14
PCDH9Q9HC56 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 AC135586.1-201ENST00000539323 574 ntBASIC15.9■□□□□ 0.14
PCDH9Q9HC56 AF228730.6-201ENST00000641497 218 ntBASIC15.9■□□□□ 0.14
PCDH9Q9HC56 AC084121.3-201ENST00000641716 218 ntBASIC15.9■□□□□ 0.14
PCDH9Q9HC56 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 AC140479.7-201ENST00000636301 2332 ntBASIC15.9■□□□□ 0.14
PCDH9Q9HC56 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 AC012508.2-201ENST00000567613 1472 ntBASIC15.9■□□□□ 0.14
PCDH9Q9HC56 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.9■□□□□ 0.14
PCDH9Q9HC56 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 UGT1A2P-201ENST00000454886 866 ntBASIC15.89■□□□□ 0.13
PCDH9Q9HC56 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 AJ011932.1-201ENST00000621707 465 ntBASIC15.89■□□□□ 0.13
PCDH9Q9HC56 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 REXO1L4P-201ENST00000605109 1937 ntBASIC15.89■□□□□ 0.13
PCDH9Q9HC56 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 SNX18-202ENST00000343017 3140 ntBASIC15.89■□□□□ 0.13
PCDH9Q9HC56 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PCDH9Q9HC56 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PCDH9Q9HC56 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PCDH9Q9HC56 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms