Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 PMS2P2-201ENST00000425039 1128 ntBASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 GAPDHP40-201ENST00000505218 1006 ntBASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 AL161772.1-201ENST00000610494 4412 ntBASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF549Q6P9A3 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 AC093214.1-201ENST00000511688 1107 ntBASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.27■□□□□ 0.04
ZNF549Q6P9A3 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF549Q6P9A3 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF549Q6P9A3 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
ZNF549Q6P9A3 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.27■□□□□ 0.03
ZNF549Q6P9A3 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF549Q6P9A3 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF549Q6P9A3 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF549Q6P9A3 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF549Q6P9A3 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.27■□□□□ 0.03
ZNF549Q6P9A3 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.27■□□□□ 0.03
ZNF549Q6P9A3 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF549Q6P9A3 AC012508.2-201ENST00000567613 1472 ntBASIC15.27■□□□□ 0.03
ZNF549Q6P9A3 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF549Q6P9A3 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF549Q6P9A3 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ZNF549Q6P9A3 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms