Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 AF254983.2-201ENST00000612331 135 ntBASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 AL157791.1-201ENST00000553667 1699 ntBASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 AC092978.1-202ENST00000637590 1327 ntBASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CSB-PGBD3P0DP91 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 UFM1-202ENST00000379649 846 ntTSL 4 BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 AC008267.1-201ENST00000474858 1069 ntBASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 AC026434.2-201ENST00000506094 1078 ntBASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 CENPX-208ENST00000584347 799 ntTSL 2 BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 AL162426.1-201ENST00000624141 743 ntBASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CSB-PGBD3P0DP91 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 AC234782.1-201ENST00000451950 919 ntBASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 CFL1-214ENST00000534769 758 ntTSL 2 BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 AC068587.8-201ENST00000641239 219 ntBASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSB-PGBD3P0DP91 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 AC092127.1-201ENST00000567093 3455 ntBASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSB-PGBD3P0DP91 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms