Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
HOXD4P09016 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXD4P09016 SNX29P1-201ENST00000548357 1007 ntBASIC14.02□□□□□ -0.17
HOXD4P09016 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC14.02□□□□□ -0.17
HOXD4P09016 AL359711.2-201ENST00000563105 872 ntBASIC14.02□□□□□ -0.17
HOXD4P09016 AC120045.2-201ENST00000567334 178 ntBASIC14.02□□□□□ -0.17
HOXD4P09016 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.02□□□□□ -0.17
HOXD4P09016 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.02□□□□□ -0.17
HOXD4P09016 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.02□□□□□ -0.17
HOXD4P09016 AL049840.4-201ENST00000602422 811 ntBASIC14.02□□□□□ -0.17
HOXD4P09016 AC093813.1-201ENST00000605066 256 ntBASIC14.02□□□□□ -0.17
HOXD4P09016 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD4P09016 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD4P09016 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
HOXD4P09016 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.02□□□□□ -0.17
HOXD4P09016 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.02□□□□□ -0.17
HOXD4P09016 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD4P09016 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD4P09016 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
HOXD4P09016 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD4P09016 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
HOXD4P09016 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD4P09016 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD4P09016 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD4P09016 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD4P09016 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD4P09016 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.02□□□□□ -0.17
HOXD4P09016 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD4P09016 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD4P09016 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD4P09016 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXD4P09016 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXD4P09016 REXO1L6P-201ENST00000603433 1515 ntBASIC14.01□□□□□ -0.17
HOXD4P09016 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXD4P09016 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
HOXD4P09016 ACKR1-201ENST00000368121 1240 ntBASIC14.01□□□□□ -0.17
HOXD4P09016 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
HOXD4P09016 C1QBPP1-201ENST00000400117 770 ntBASIC14.01□□□□□ -0.17
HOXD4P09016 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXD4P09016 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXD4P09016 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.01□□□□□ -0.17
HOXD4P09016 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXD4P09016 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HOXD4P09016 USP32P1-208ENST00000506594 1164 ntBASIC14.01□□□□□ -0.17
HOXD4P09016 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXD4P09016 TDH-203ENST00000531764 1110 ntBASIC14.01□□□□□ -0.17
HOXD4P09016 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.01□□□□□ -0.17
HOXD4P09016 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.01□□□□□ -0.17
HOXD4P09016 AP001063.1-201ENST00000568332 529 ntBASIC14.01□□□□□ -0.17
HOXD4P09016 MIR4525-201ENST00000580000 75 ntBASIC14.01□□□□□ -0.17
HOXD4P09016 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXD4P09016 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HOXD4P09016 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXD4P09016 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.01□□□□□ -0.17
HOXD4P09016 AC023157.3-201ENST00000619086 2088 ntBASIC14.01□□□□□ -0.17
HOXD4P09016 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.01□□□□□ -0.17
HOXD4P09016 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
HOXD4P09016 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 ALOX12P2-203ENST00000570921 1945 ntBASIC14.01□□□□□ -0.17
HOXD4P09016 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HOXD4P09016 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXD4P09016 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.01□□□□□ -0.17
HOXD4P09016 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.01□□□□□ -0.17
HOXD4P09016 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXD4P09016 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HOXD4P09016 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD4P09016 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 CICP24-201ENST00000605464 2705 ntBASIC14□□□□□ -0.17
HOXD4P09016 AC106881.1-201ENST00000605849 3329 ntBASIC14□□□□□ -0.17
HOXD4P09016 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14□□□□□ -0.17
HOXD4P09016 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
HOXD4P09016 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
HOXD4P09016 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14□□□□□ -0.17
HOXD4P09016 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD4P09016 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14□□□□□ -0.17
HOXD4P09016 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14□□□□□ -0.17
HOXD4P09016 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms