Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
APOEP02649 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.15■□□□□ 0.18
APOEP02649 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
APOEP02649 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
APOEP02649 AC134915.1-201ENST00000426461 574 ntBASIC16.15■□□□□ 0.18
APOEP02649 VDAC1P7-201ENST00000462417 847 ntBASIC16.15■□□□□ 0.18
APOEP02649 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.15■□□□□ 0.18
APOEP02649 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.15■□□□□ 0.18
APOEP02649 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.15■□□□□ 0.18
APOEP02649 AC084364.1-201ENST00000551967 1556 ntBASIC16.15■□□□□ 0.18
APOEP02649 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.15■□□□□ 0.18
APOEP02649 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.15■□□□□ 0.18
APOEP02649 BRI3BPP1-201ENST00000594224 787 ntBASIC16.15■□□□□ 0.18
APOEP02649 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
APOEP02649 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.15■□□□□ 0.18
APOEP02649 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.15■□□□□ 0.18
APOEP02649 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.15■□□□□ 0.18
APOEP02649 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
APOEP02649 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.15■□□□□ 0.18
APOEP02649 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.15■□□□□ 0.18
APOEP02649 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.18
APOEP02649 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.14■□□□□ 0.18
APOEP02649 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
APOEP02649 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 INTS4P2-202ENST00000614726 2019 ntBASIC16.14■□□□□ 0.17
APOEP02649 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.14■□□□□ 0.17
APOEP02649 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
APOEP02649 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.14■□□□□ 0.17
APOEP02649 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.14■□□□□ 0.17
APOEP02649 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 AC005225.4-201ENST00000557330 545 ntBASIC16.14■□□□□ 0.17
APOEP02649 AL596325.1-201ENST00000563991 1082 ntBASIC16.14■□□□□ 0.17
APOEP02649 CTBP2P3-201ENST00000585629 1255 ntBASIC16.14■□□□□ 0.17
APOEP02649 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.14■□□□□ 0.17
APOEP02649 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.14■□□□□ 0.17
APOEP02649 AC012645.4-201ENST00000610691 1061 ntBASIC16.14■□□□□ 0.17
APOEP02649 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.14■□□□□ 0.17
APOEP02649 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 AC112693.3-201ENST00000624819 1983 ntBASIC16.14■□□□□ 0.17
APOEP02649 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.14■□□□□ 0.17
APOEP02649 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
APOEP02649 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.14■□□□□ 0.17
APOEP02649 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.14■□□□□ 0.17
APOEP02649 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.14■□□□□ 0.17
APOEP02649 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.14■□□□□ 0.17
APOEP02649 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC16.14■□□□□ 0.17
APOEP02649 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
APOEP02649 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.14■□□□□ 0.17
APOEP02649 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
APOEP02649 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.13■□□□□ 0.17
APOEP02649 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
APOEP02649 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
APOEP02649 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
APOEP02649 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.13■□□□□ 0.17
APOEP02649 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.13■□□□□ 0.17
APOEP02649 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 AC099063.4-201ENST00000641099 1602 ntBASIC16.13■□□□□ 0.17
APOEP02649 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.13■□□□□ 0.17
APOEP02649 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
APOEP02649 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
APOEP02649 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms