Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC19.92■□□□□ 0.78
COL3A1P02461 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 GRN-222ENST00000639447 1314 ntTSL 2 BASIC19.91■□□□□ 0.78
COL3A1P02461 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC19.91■□□□□ 0.78
COL3A1P02461 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
COL3A1P02461 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 API5-203ENST00000455725 2257 ntTSL 2 BASIC19.91■□□□□ 0.78
COL3A1P02461 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
COL3A1P02461 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC19.91■□□□□ 0.78
COL3A1P02461 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
COL3A1P02461 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC19.91■□□□□ 0.78
COL3A1P02461 SHC1P1-201ENST00000425230 1745 ntBASIC19.91■□□□□ 0.78
COL3A1P02461 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 E2F3P2-201ENST00000447755 1422 ntBASIC19.91■□□□□ 0.78
COL3A1P02461 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC19.91■□□□□ 0.78
COL3A1P02461 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 AGER-214ENST00000538695 487 ntTSL 2 BASIC19.91■□□□□ 0.78
COL3A1P02461 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC19.91■□□□□ 0.78
COL3A1P02461 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC19.91■□□□□ 0.78
COL3A1P02461 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC19.91■□□□□ 0.78
COL3A1P02461 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 CICP23-201ENST00000605013 2741 ntBASIC19.91■□□□□ 0.78
COL3A1P02461 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL3A1P02461 AC046158.3-201ENST00000624947 2558 ntBASIC19.91■□□□□ 0.78
COL3A1P02461 SALL4P5-201ENST00000419001 1760 ntBASIC19.91■□□□□ 0.78
COL3A1P02461 GPI-205ENST00000586425 1799 ntTSL 5 BASIC19.91■□□□□ 0.78
COL3A1P02461 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC19.91■□□□□ 0.78
COL3A1P02461 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC19.9■□□□□ 0.78
COL3A1P02461 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC19.9■□□□□ 0.78
COL3A1P02461 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC19.9■□□□□ 0.78
COL3A1P02461 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 AC020907.1-201ENST00000616460 1350 ntBASIC19.9■□□□□ 0.78
COL3A1P02461 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
COL3A1P02461 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
COL3A1P02461 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 HYMAI-201ENST00000635591 3347 ntBASIC19.9■□□□□ 0.78
COL3A1P02461 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC19.9■□□□□ 0.78
COL3A1P02461 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
COL3A1P02461 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
COL3A1P02461 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
COL3A1P02461 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC19.9■□□□□ 0.78
COL3A1P02461 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC19.9■□□□□ 0.78
COL3A1P02461 AL162426.1-201ENST00000624141 743 ntBASIC19.9■□□□□ 0.78
COL3A1P02461 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL3A1P02461 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
COL3A1P02461 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL3A1P02461 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL3A1P02461 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL3A1P02461 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC19.89■□□□□ 0.77
COL3A1P02461 AC104306.2-201ENST00000451877 341 ntBASIC19.89■□□□□ 0.77
COL3A1P02461 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC19.89■□□□□ 0.77
COL3A1P02461 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC19.89■□□□□ 0.77
COL3A1P02461 RN7SL219P-201ENST00000582872 296 ntBASIC19.89■□□□□ 0.77
COL3A1P02461 AC091271.1-201ENST00000611877 1162 ntBASIC19.89■□□□□ 0.77
COL3A1P02461 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL3A1P02461 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL3A1P02461 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL3A1P02461 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL3A1P02461 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL3A1P02461 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL3A1P02461 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL3A1P02461 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
COL3A1P02461 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL3A1P02461 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
COL3A1P02461 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC19.89■□□□□ 0.77
COL3A1P02461 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL3A1P02461 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL3A1P02461 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL3A1P02461 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC19.89■□□□□ 0.77
COL3A1P02461 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL3A1P02461 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms