Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
VPS4BO75351 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 AC098614.1-201ENST00000368528 745 ntBASIC15.15■□□□□ 0.02
VPS4BO75351 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4BO75351 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.15■□□□□ 0.02
VPS4BO75351 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4BO75351 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
VPS4BO75351 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
VPS4BO75351 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
VPS4BO75351 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS4BO75351 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS4BO75351 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS4BO75351 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4BO75351 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.15■□□□□ 0.02
VPS4BO75351 AC003101.2-201ENST00000612557 442 ntBASIC15.15■□□□□ 0.02
VPS4BO75351 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
VPS4BO75351 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS4BO75351 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
VPS4BO75351 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS4BO75351 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.15■□□□□ 0.02
VPS4BO75351 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
VPS4BO75351 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
VPS4BO75351 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
VPS4BO75351 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS4BO75351 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.14■□□□□ 0.01
VPS4BO75351 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 AJ011931.1-201ENST00000618749 2492 ntBASIC15.14■□□□□ 0.01
VPS4BO75351 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS4BO75351 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.14■□□□□ 0.01
VPS4BO75351 U91328.1-201ENST00000437528 223 ntBASIC15.14■□□□□ 0.01
VPS4BO75351 SPTLC1P1-201ENST00000447199 261 ntBASIC15.14■□□□□ 0.01
VPS4BO75351 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.14■□□□□ 0.01
VPS4BO75351 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS4BO75351 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.14■□□□□ 0.01
VPS4BO75351 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
VPS4BO75351 TP53TG3HP-202ENST00000569755 579 ntBASIC15.14■□□□□ 0.01
VPS4BO75351 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
VPS4BO75351 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
VPS4BO75351 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
VPS4BO75351 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
VPS4BO75351 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
VPS4BO75351 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS4BO75351 AC084364.1-201ENST00000551967 1556 ntBASIC15.14■□□□□ 0.01
VPS4BO75351 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
VPS4BO75351 AC007541.1-201ENST00000570282 1469 ntBASIC15.14■□□□□ 0.01
VPS4BO75351 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS4BO75351 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
VPS4BO75351 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.13■□□□□ 0.01
VPS4BO75351 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
VPS4BO75351 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.13■□□□□ 0.01
VPS4BO75351 AZGP1P1-201ENST00000411909 902 ntBASIC15.13■□□□□ 0.01
VPS4BO75351 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
VPS4BO75351 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.13■□□□□ 0.01
VPS4BO75351 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.13■□□□□ 0.01
VPS4BO75351 AC245100.3-201ENST00000441281 285 ntBASIC15.13■□□□□ 0.01
VPS4BO75351 GIMAP3P-201ENST00000495150 836 ntBASIC15.13■□□□□ 0.01
VPS4BO75351 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC15.13■□□□□ 0.01
VPS4BO75351 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.13■□□□□ 0.01
VPS4BO75351 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC15.13■□□□□ 0.01
VPS4BO75351 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.13■□□□□ 0.01
VPS4BO75351 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 HILS1-202ENST00000545329 423 ntBASIC15.13■□□□□ 0.01
VPS4BO75351 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
VPS4BO75351 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms