Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP4O75161 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC21.02■□□□□ 0.96
NPHP4O75161 AL135901.1-201ENST00000451812 333 ntBASIC21.02■□□□□ 0.96
NPHP4O75161 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC21.02■□□□□ 0.96
NPHP4O75161 AC138701.2-201ENST00000553634 226 ntBASIC21.02■□□□□ 0.96
NPHP4O75161 AL022334.2-201ENST00000610000 484 ntBASIC21.02■□□□□ 0.96
NPHP4O75161 HMGB1P24-201ENST00000611897 328 ntBASIC21.02■□□□□ 0.96
NPHP4O75161 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
NPHP4O75161 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
NPHP4O75161 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
NPHP4O75161 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
NPHP4O75161 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP4O75161 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC21.01■□□□□ 0.95
NPHP4O75161 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP4O75161 ZNF436-AS1-201ENST00000335648 2547 ntBASIC21.01■□□□□ 0.95
NPHP4O75161 SLC9A7P1-202ENST00000556476 2239 ntBASIC21.01■□□□□ 0.95
NPHP4O75161 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
NPHP4O75161 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP4O75161 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
NPHP4O75161 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC21.01■□□□□ 0.95
NPHP4O75161 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP4O75161 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP4O75161 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
NPHP4O75161 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC21.01■□□□□ 0.95
NPHP4O75161 OR2R1P-201ENST00000441404 914 ntBASIC21.01■□□□□ 0.95
NPHP4O75161 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC21.01■□□□□ 0.95
NPHP4O75161 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP4O75161 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC21.01■□□□□ 0.95
NPHP4O75161 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC21.01■□□□□ 0.95
NPHP4O75161 AC002044.2-201ENST00000624910 970 ntBASIC21.01■□□□□ 0.95
NPHP4O75161 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC21.01■□□□□ 0.95
NPHP4O75161 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP4O75161 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP4O75161 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
NPHP4O75161 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC21.01■□□□□ 0.95
NPHP4O75161 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC21■□□□□ 0.95
NPHP4O75161 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP4O75161 FLJ38576-201ENST00000623820 2459 ntBASIC21■□□□□ 0.95
NPHP4O75161 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC21■□□□□ 0.95
NPHP4O75161 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
NPHP4O75161 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP4O75161 REXO1L4P-201ENST00000605109 1937 ntBASIC21■□□□□ 0.95
NPHP4O75161 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP4O75161 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC21■□□□□ 0.95
NPHP4O75161 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP4O75161 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC21■□□□□ 0.95
NPHP4O75161 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC21■□□□□ 0.95
NPHP4O75161 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP4O75161 RN7SKP109-201ENST00000410592 316 ntBASIC21■□□□□ 0.95
NPHP4O75161 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC21■□□□□ 0.95
NPHP4O75161 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
NPHP4O75161 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC21■□□□□ 0.95
NPHP4O75161 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC21■□□□□ 0.95
NPHP4O75161 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC21■□□□□ 0.95
NPHP4O75161 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP4O75161 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
NPHP4O75161 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC21■□□□□ 0.95
NPHP4O75161 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP4O75161 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP4O75161 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC21■□□□□ 0.95
NPHP4O75161 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC21■□□□□ 0.95
NPHP4O75161 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC21■□□□□ 0.95
NPHP4O75161 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC21■□□□□ 0.95
NPHP4O75161 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP4O75161 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP4O75161 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP4O75161 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP4O75161 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP4O75161 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP4O75161 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP4O75161 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
NPHP4O75161 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP4O75161 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC20.99■□□□□ 0.95
NPHP4O75161 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC20.99■□□□□ 0.95
NPHP4O75161 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC20.99■□□□□ 0.95
NPHP4O75161 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
NPHP4O75161 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC20.99■□□□□ 0.95
NPHP4O75161 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP4O75161 FTLP5-201ENST00000586853 534 ntBASIC20.99■□□□□ 0.95
NPHP4O75161 AL139339.2-201ENST00000608063 657 ntBASIC20.99■□□□□ 0.95
NPHP4O75161 AL627230.2-201ENST00000613254 655 ntBASIC20.99■□□□□ 0.95
NPHP4O75161 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
NPHP4O75161 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP4O75161 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP4O75161 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP4O75161 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP4O75161 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC20.99■□□□□ 0.95
NPHP4O75161 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP4O75161 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP4O75161 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC20.99■□□□□ 0.95
NPHP4O75161 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
NPHP4O75161 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
NPHP4O75161 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP4O75161 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP4O75161 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP4O75161 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC20.98■□□□□ 0.95
NPHP4O75161 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP4O75161 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP4O75161 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC20.98■□□□□ 0.95
NPHP4O75161 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms