Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC21.73■■□□□ 1.07
MSH5O43196 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH5O43196 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
MSH5O43196 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH5O43196 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC21.73■■□□□ 1.07
MSH5O43196 AL136520.1-201ENST00000600311 1322 ntBASIC21.73■■□□□ 1.07
MSH5O43196 CICP13-201ENST00000422015 2789 ntBASIC21.73■■□□□ 1.07
MSH5O43196 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC21.73■■□□□ 1.07
MSH5O43196 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
MSH5O43196 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
MSH5O43196 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
MSH5O43196 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
MSH5O43196 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH5O43196 PAXIP1-AS2-201ENST00000397551 1692 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MSH5O43196 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH5O43196 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
MSH5O43196 CLEC5A-207ENST00000551012 1420 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MSH5O43196 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH5O43196 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH5O43196 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
MSH5O43196 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH5O43196 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC21.72■■□□□ 1.07
MSH5O43196 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MSH5O43196 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
MSH5O43196 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC21.72■■□□□ 1.07
MSH5O43196 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH5O43196 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH5O43196 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MSH5O43196 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
MSH5O43196 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
MSH5O43196 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MSH5O43196 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH5O43196 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
MSH5O43196 AC114973.1-201ENST00000429057 632 ntBASIC21.72■■□□□ 1.07
MSH5O43196 OR6C71P-201ENST00000432580 913 ntBASIC21.72■■□□□ 1.07
MSH5O43196 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC21.72■■□□□ 1.07
MSH5O43196 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC21.72■■□□□ 1.07
MSH5O43196 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC21.72■■□□□ 1.07
MSH5O43196 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH5O43196 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
MSH5O43196 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH5O43196 Metazoa_SRP.60-201ENST00000616888 305 ntBASIC21.72■■□□□ 1.07
MSH5O43196 AL158062.1-201ENST00000619632 745 ntBASIC21.72■■□□□ 1.07
MSH5O43196 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH5O43196 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
MSH5O43196 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH5O43196 AC104581.4-201ENST00000623126 3052 ntBASIC21.72■■□□□ 1.07
MSH5O43196 ZNF410-219ENST00000556797 1311 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH5O43196 AC245100.4-202ENST00000634638 1342 ntTSL 5 BASIC21.72■■□□□ 1.07
MSH5O43196 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
MSH5O43196 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH5O43196 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH5O43196 TRIM64C-201ENST00000617704 1353 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
MSH5O43196 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
MSH5O43196 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC21.71■■□□□ 1.07
MSH5O43196 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC21.71■■□□□ 1.07
MSH5O43196 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
MSH5O43196 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 TPRKB-201ENST00000272424 748 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC21.71■■□□□ 1.07
MSH5O43196 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
MSH5O43196 MRPS18AP1-201ENST00000414458 589 ntBASIC21.71■■□□□ 1.07
MSH5O43196 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 NUP35P2-201ENST00000416748 943 ntBASIC21.71■■□□□ 1.07
MSH5O43196 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC21.71■■□□□ 1.07
MSH5O43196 TRAV31-201ENST00000502780 342 ntBASIC21.71■■□□□ 1.07
MSH5O43196 IGHV3-71-201ENST00000523324 359 ntBASIC21.71■■□□□ 1.07
MSH5O43196 GATD1-206ENST00000526325 756 ntTSL 5 BASIC21.71■■□□□ 1.07
MSH5O43196 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC21.71■■□□□ 1.07
MSH5O43196 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC21.71■■□□□ 1.07
MSH5O43196 U91319.1-201ENST00000571619 764 ntTSL 3 BASIC21.71■■□□□ 1.07
MSH5O43196 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC21.71■■□□□ 1.07
MSH5O43196 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC21.71■■□□□ 1.07
MSH5O43196 AC010738.1-201ENST00000604970 987 ntBASIC21.71■■□□□ 1.07
MSH5O43196 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC21.71■■□□□ 1.07
MSH5O43196 AC239585.2-202ENST00000624629 434 ntTSL 5 BASIC21.71■■□□□ 1.07
MSH5O43196 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 CICP4-201ENST00000447359 2812 ntBASIC21.71■■□□□ 1.07
MSH5O43196 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
MSH5O43196 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 TSPY26P-202ENST00000565928 3884 ntBASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms