Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
PHGDHO43175 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 SBF1P1-201ENST00000444527 5631 ntBASIC15.36■□□□□ 0.05
PHGDHO43175 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.36■□□□□ 0.05
PHGDHO43175 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
PHGDHO43175 AC015922.1-201ENST00000421102 1152 ntBASIC15.36■□□□□ 0.05
PHGDHO43175 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 AC004967.1-201ENST00000453589 447 ntBASIC15.36■□□□□ 0.05
PHGDHO43175 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.36■□□□□ 0.05
PHGDHO43175 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.36■□□□□ 0.05
PHGDHO43175 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.36■□□□□ 0.05
PHGDHO43175 AC025181.2-201ENST00000606994 802 ntBASIC15.36■□□□□ 0.05
PHGDHO43175 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.36■□□□□ 0.05
PHGDHO43175 Z92544.3-201ENST00000624747 417 ntBASIC15.36■□□□□ 0.05
PHGDHO43175 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
PHGDHO43175 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
PHGDHO43175 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.36■□□□□ 0.05
PHGDHO43175 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
PHGDHO43175 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PHGDHO43175 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
PHGDHO43175 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 AC015656.1-201ENST00000624209 3578 ntBASIC15.35■□□□□ 0.05
PHGDHO43175 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 AC007326.2-201ENST00000624224 7579 ntBASIC15.35■□□□□ 0.05
PHGDHO43175 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
PHGDHO43175 AL139400.1-201ENST00000366220 510 ntBASIC15.35■□□□□ 0.05
PHGDHO43175 AL133267.1-201ENST00000398220 340 ntBASIC15.35■□□□□ 0.05
PHGDHO43175 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.35■□□□□ 0.05
PHGDHO43175 DNAJB3-202ENST00000449667 1266 ntBASIC15.35■□□□□ 0.05
PHGDHO43175 HLA-V-204ENST00000476601 1289 ntBASIC15.35■□□□□ 0.05
PHGDHO43175 HLA-J-203ENST00000494367 1087 ntBASIC15.35■□□□□ 0.05
PHGDHO43175 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.35■□□□□ 0.05
PHGDHO43175 AC010336.2-201ENST00000564226 506 ntBASIC15.35■□□□□ 0.05
PHGDHO43175 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.35■□□□□ 0.05
PHGDHO43175 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
PHGDHO43175 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.35■□□□□ 0.05
PHGDHO43175 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 AC005912.2-201ENST00000619492 2400 ntBASIC15.35■□□□□ 0.05
PHGDHO43175 AC007191.1-201ENST00000623179 2995 ntBASIC15.35■□□□□ 0.05
PHGDHO43175 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.35■□□□□ 0.05
PHGDHO43175 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
PHGDHO43175 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.35■□□□□ 0.05
PHGDHO43175 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
PHGDHO43175 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
PHGDHO43175 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
PHGDHO43175 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PHGDHO43175 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PHGDHO43175 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.34■□□□□ 0.05
PHGDHO43175 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PHGDHO43175 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
PHGDHO43175 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PHGDHO43175 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PHGDHO43175 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PHGDHO43175 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PHGDHO43175 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PHGDHO43175 AL121723.1-201ENST00000445194 1519 ntBASIC15.34■□□□□ 0.05
PHGDHO43175 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.34■□□□□ 0.05
PHGDHO43175 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PHGDHO43175 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
PHGDHO43175 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.34■□□□□ 0.05
PHGDHO43175 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PHGDHO43175 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PHGDHO43175 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PHGDHO43175 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PHGDHO43175 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.34■□□□□ 0.05
PHGDHO43175 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.34■□□□□ 0.05
PHGDHO43175 TSEN15P1-201ENST00000423257 515 ntBASIC15.34■□□□□ 0.05
PHGDHO43175 FAM8A3P-201ENST00000427218 844 ntBASIC15.34■□□□□ 0.05
PHGDHO43175 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.34■□□□□ 0.05
PHGDHO43175 RN7SL618P-201ENST00000477850 296 ntBASIC15.34■□□□□ 0.05
PHGDHO43175 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms