Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
RTFDC1Q9BY42 AL139384.1-201ENST00000612143 3047 ntBASIC18.43■□□□□ 0.54
RTFDC1Q9BY42 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.43■□□□□ 0.54
RTFDC1Q9BY42 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RTFDC1Q9BY42 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RTFDC1Q9BY42 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.43■□□□□ 0.54
RTFDC1Q9BY42 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RTFDC1Q9BY42 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
RTFDC1Q9BY42 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 AK6-201ENST00000380818 1183 ntTSL 2 BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 HLA-J-204ENST00000495278 958 ntBASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 LY6E-208ENST00000520531 490 ntTSL 2 BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 AC242376.1-201ENST00000559033 726 ntBASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 TNRC18P3-201ENST00000441896 2691 ntBASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 AC026691.1-201ENST00000602502 2017 ntBASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.42■□□□□ 0.54
RTFDC1Q9BY42 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 INE2-201ENST00000630399 1874 ntBASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 E2F3P2-201ENST00000447755 1422 ntBASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 AP005117.1-202ENST00000581724 1908 ntBASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 RBM38-204ENST00000371219 760 ntTSL 2 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 VDAC1P1-201ENST00000439229 848 ntBASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 AC104784.1-201ENST00000473096 294 ntBASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 AC116345.2-201ENST00000512837 523 ntBASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 IQSEC3P1-201ENST00000538799 536 ntBASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 AP003419.4-201ENST00000616071 517 ntBASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 AC009093.2-202ENST00000620513 2079 ntBASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RTFDC1Q9BY42 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RTFDC1Q9BY42 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RTFDC1Q9BY42 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RTFDC1Q9BY42 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RTFDC1Q9BY42 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
RTFDC1Q9BY42 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RTFDC1Q9BY42 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RTFDC1Q9BY42 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.4■□□□□ 0.54
RTFDC1Q9BY42 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.4■□□□□ 0.54
RTFDC1Q9BY42 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
RTFDC1Q9BY42 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RTFDC1Q9BY42 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RTFDC1Q9BY42 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RTFDC1Q9BY42 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms