Protein–RNA interactions for Protein: Q99743

NPAS2, Neuronal PAS domain-containing protein 2, humanhuman

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS2Q99743 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
NPAS2Q99743 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NPAS2Q99743 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
NPAS2Q99743 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
NPAS2Q99743 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NPAS2Q99743 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
NPAS2Q99743 HLA-H-201ENST00000383620 1096 ntBASIC15.15■□□□□ 0.02
NPAS2Q99743 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NPAS2Q99743 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
NPAS2Q99743 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC15.15■□□□□ 0.02
NPAS2Q99743 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.15■□□□□ 0.02
NPAS2Q99743 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.15■□□□□ 0.02
NPAS2Q99743 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.15■□□□□ 0.02
NPAS2Q99743 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.15■□□□□ 0.02
NPAS2Q99743 UGT1A2P-201ENST00000454886 866 ntBASIC15.15■□□□□ 0.02
NPAS2Q99743 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NPAS2Q99743 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NPAS2Q99743 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NPAS2Q99743 AC069120.2-201ENST00000524091 540 ntBASIC15.15■□□□□ 0.02
NPAS2Q99743 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NPAS2Q99743 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.15■□□□□ 0.02
NPAS2Q99743 AC003101.2-201ENST00000612557 442 ntBASIC15.15■□□□□ 0.02
NPAS2Q99743 AL390754.1-201ENST00000619088 582 ntBASIC15.15■□□□□ 0.02
NPAS2Q99743 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NPAS2Q99743 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NPAS2Q99743 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NPAS2Q99743 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
NPAS2Q99743 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.15■□□□□ 0.02
NPAS2Q99743 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
NPAS2Q99743 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NPAS2Q99743 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NPAS2Q99743 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.15■□□□□ 0.02
NPAS2Q99743 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.15■□□□□ 0.02
NPAS2Q99743 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.15■□□□□ 0.02
NPAS2Q99743 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
NPAS2Q99743 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.15■□□□□ 0.02
NPAS2Q99743 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.14■□□□□ 0.01
NPAS2Q99743 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
NPAS2Q99743 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
NPAS2Q99743 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.14■□□□□ 0.01
NPAS2Q99743 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.14■□□□□ 0.01
NPAS2Q99743 ABR-228ENST00000574437 3196 ntTSL 5 BASIC15.14■□□□□ 0.01
NPAS2Q99743 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.14■□□□□ 0.01
NPAS2Q99743 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.14■□□□□ 0.01
NPAS2Q99743 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
NPAS2Q99743 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.14■□□□□ 0.01
NPAS2Q99743 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.14■□□□□ 0.01
NPAS2Q99743 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 AC098859.1-201ENST00000502915 1238 ntBASIC15.14■□□□□ 0.01
NPAS2Q99743 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.14■□□□□ 0.01
NPAS2Q99743 BANF1P1-201ENST00000553684 263 ntBASIC15.14■□□□□ 0.01
NPAS2Q99743 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.14■□□□□ 0.01
NPAS2Q99743 AC007967.4-201ENST00000614700 386 ntBASIC15.14■□□□□ 0.01
NPAS2Q99743 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.14■□□□□ 0.01
NPAS2Q99743 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.14■□□□□ 0.01
NPAS2Q99743 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.14■□□□□ 0.01
NPAS2Q99743 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.14■□□□□ 0.01
NPAS2Q99743 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
NPAS2Q99743 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.14■□□□□ 0.01
NPAS2Q99743 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
NPAS2Q99743 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NPAS2Q99743 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
NPAS2Q99743 OR2I1P-209ENST00000641730 5365 ntBASIC15.13■□□□□ 0.01
NPAS2Q99743 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NPAS2Q99743 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NPAS2Q99743 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NPAS2Q99743 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.13■□□□□ 0.01
NPAS2Q99743 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NPAS2Q99743 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.13■□□□□ 0.01
NPAS2Q99743 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
NPAS2Q99743 LINC01230-201ENST00000625222 3017 ntBASIC15.13■□□□□ 0.01
NPAS2Q99743 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NPAS2Q99743 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
NPAS2Q99743 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NPAS2Q99743 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
NPAS2Q99743 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NPAS2Q99743 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NPAS2Q99743 MIR661-201ENST00000384842 89 ntBASIC15.13■□□□□ 0.01
NPAS2Q99743 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
NPAS2Q99743 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.13■□□□□ 0.01
NPAS2Q99743 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.13■□□□□ 0.01
NPAS2Q99743 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms