Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 HSPB1P2-201ENST00000448722 546 ntBASIC15.39■□□□□ 0.05
HMGB4Q8WW32 HIST2H2BC-201ENST00000498492 580 ntBASIC15.39■□□□□ 0.05
HMGB4Q8WW32 COX5BP1-201ENST00000507622 393 ntBASIC15.39■□□□□ 0.05
HMGB4Q8WW32 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.39■□□□□ 0.05
HMGB4Q8WW32 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 KRT8P14-201ENST00000414254 1442 ntBASIC15.38■□□□□ 0.05
HMGB4Q8WW32 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 CSH2-202ENST00000345366 598 ntTSL 5 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 AC092506.1-202ENST00000401022 528 ntBASIC15.38■□□□□ 0.05
HMGB4Q8WW32 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.38■□□□□ 0.05
HMGB4Q8WW32 AC079178.1-201ENST00000420915 656 ntBASIC15.38■□□□□ 0.05
HMGB4Q8WW32 POM121L10P-201ENST00000436994 1285 ntBASIC15.38■□□□□ 0.05
HMGB4Q8WW32 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 RNA5SP423-201ENST00000517127 109 ntBASIC15.38■□□□□ 0.05
HMGB4Q8WW32 ADM-202ENST00000524948 584 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 PPY2P-201ENST00000582808 702 ntBASIC15.38■□□□□ 0.05
HMGB4Q8WW32 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 NKG7-204ENST00000595217 816 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 AL451050.2-201ENST00000606967 682 ntBASIC15.38■□□□□ 0.05
HMGB4Q8WW32 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
HMGB4Q8WW32 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB4Q8WW32 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB4Q8WW32 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB4Q8WW32 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.37■□□□□ 0.05
HMGB4Q8WW32 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB4Q8WW32 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
HMGB4Q8WW32 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB4Q8WW32 AC084364.1-201ENST00000551967 1556 ntBASIC15.37■□□□□ 0.05
HMGB4Q8WW32 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
HMGB4Q8WW32 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.37■□□□□ 0.05
HMGB4Q8WW32 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB4Q8WW32 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.37■□□□□ 0.05
HMGB4Q8WW32 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
HMGB4Q8WW32 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB4Q8WW32 AL645937.2-201ENST00000396808 931 ntBASIC15.37■□□□□ 0.05
HMGB4Q8WW32 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGB4Q8WW32 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB4Q8WW32 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HMGB4Q8WW32 BX284668.4-201ENST00000453917 508 ntBASIC15.37■□□□□ 0.05
HMGB4Q8WW32 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC15.37■□□□□ 0.05
HMGB4Q8WW32 RNF41-210ENST00000552244 716 ntTSL 3 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms