Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 CYP2AB1P-202ENST00000454440 1456 ntBASIC13.69□□□□□ -0.22
SKA3Q8IX90 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 PKIG-203ENST00000372887 769 ntTSL 3 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 SERBP1P5-201ENST00000510079 1181 ntBASIC13.69□□□□□ -0.22
SKA3Q8IX90 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 AC009118.2-201ENST00000613275 655 ntBASIC13.69□□□□□ -0.22
SKA3Q8IX90 HADH-212ENST00000638621 741 ntTSL 5 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 AC084364.1-201ENST00000551967 1556 ntBASIC13.69□□□□□ -0.22
SKA3Q8IX90 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 AC112693.3-201ENST00000624819 1983 ntBASIC13.69□□□□□ -0.22
SKA3Q8IX90 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 AMT-224ENST00000635808 1610 ntTSL 5 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 MFF-204ENST00000353339 2186 ntTSL 5 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 WDR53-203ENST00000429115 683 ntTSL 2 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 HMGN1P19-201ENST00000436976 333 ntBASIC13.68□□□□□ -0.22
SKA3Q8IX90 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 KRT18P43-201ENST00000469825 1281 ntBASIC13.68□□□□□ -0.22
SKA3Q8IX90 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 TPRX2P-201ENST00000535362 881 ntBASIC13.68□□□□□ -0.22
SKA3Q8IX90 AC023310.3-201ENST00000557027 670 ntBASIC13.68□□□□□ -0.22
SKA3Q8IX90 AC100756.1-201ENST00000562736 682 ntBASIC13.68□□□□□ -0.22
SKA3Q8IX90 AC138749.3-201ENST00000567691 622 ntBASIC13.68□□□□□ -0.22
SKA3Q8IX90 UBL5-208ENST00000593087 320 ntTSL 3 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 LINC02560-201ENST00000596379 459 ntBASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms