Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 VDAC1P7-201ENST00000462417 847 ntBASIC18.59■□□□□ 0.57
VPS53Q5VIR6 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 AL049840.4-201ENST00000602422 811 ntBASIC18.59■□□□□ 0.57
VPS53Q5VIR6 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VPS53Q5VIR6 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
VPS53Q5VIR6 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
VPS53Q5VIR6 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
VPS53Q5VIR6 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
VPS53Q5VIR6 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.57
VPS53Q5VIR6 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC18.58■□□□□ 0.57
VPS53Q5VIR6 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
VPS53Q5VIR6 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VPS53Q5VIR6 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 GAPDHP40-201ENST00000505218 1006 ntBASIC18.58■□□□□ 0.56
VPS53Q5VIR6 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 AC092552.1-201ENST00000547243 906 ntBASIC18.58■□□□□ 0.56
VPS53Q5VIR6 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS53Q5VIR6 AGAP7P-201ENST00000582299 2062 ntBASIC18.58■□□□□ 0.56
VPS53Q5VIR6 AGAP14-201ENST00000624701 2060 ntBASIC18.58■□□□□ 0.56
VPS53Q5VIR6 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 DRD5P1-201ENST00000456605 1438 ntBASIC18.57■□□□□ 0.56
VPS53Q5VIR6 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 POR-201ENST00000394893 2532 ntTSL 5 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 RPL5P21-201ENST00000404620 815 ntBASIC18.57■□□□□ 0.56
VPS53Q5VIR6 AC087499.6-201ENST00000411576 835 ntBASIC18.57■□□□□ 0.56
VPS53Q5VIR6 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 AC025048.6-201ENST00000634326 1161 ntBASIC18.57■□□□□ 0.56
VPS53Q5VIR6 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS53Q5VIR6 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms