Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC13.24□□□□□ -0.29
ABCA4P78363 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
ABCA4P78363 HIST2H2BC-201ENST00000498492 580 ntBASIC13.24□□□□□ -0.29
ABCA4P78363 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
ABCA4P78363 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.24□□□□□ -0.29
ABCA4P78363 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.24□□□□□ -0.29
ABCA4P78363 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC13.24□□□□□ -0.29
ABCA4P78363 AP005019.2-201ENST00000615104 511 ntBASIC13.24□□□□□ -0.29
ABCA4P78363 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
ABCA4P78363 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
ABCA4P78363 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
ABCA4P78363 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
ABCA4P78363 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC13.24□□□□□ -0.29
ABCA4P78363 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.24□□□□□ -0.29
ABCA4P78363 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
ABCA4P78363 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
ABCA4P78363 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
ABCA4P78363 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
ABCA4P78363 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC13.23□□□□□ -0.29
ABCA4P78363 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
ABCA4P78363 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
ABCA4P78363 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
ABCA4P78363 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
ABCA4P78363 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
ABCA4P78363 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
ABCA4P78363 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC13.23□□□□□ -0.29
ABCA4P78363 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC13.23□□□□□ -0.29
ABCA4P78363 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.23□□□□□ -0.29
ABCA4P78363 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC13.23□□□□□ -0.29
ABCA4P78363 PPY2P-201ENST00000582808 702 ntBASIC13.23□□□□□ -0.29
ABCA4P78363 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
ABCA4P78363 ECM1P1-201ENST00000604092 1279 ntBASIC13.23□□□□□ -0.29
ABCA4P78363 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
ABCA4P78363 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC13.23□□□□□ -0.29
ABCA4P78363 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC13.23□□□□□ -0.29
ABCA4P78363 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
ABCA4P78363 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
ABCA4P78363 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
ABCA4P78363 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC13.23□□□□□ -0.29
ABCA4P78363 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
ABCA4P78363 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
ABCA4P78363 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
ABCA4P78363 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
ABCA4P78363 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.23□□□□□ -0.29
ABCA4P78363 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
ABCA4P78363 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC13.23□□□□□ -0.29
ABCA4P78363 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
ABCA4P78363 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
ABCA4P78363 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
ABCA4P78363 TPM3P8-201ENST00000330554 643 ntBASIC13.23□□□□□ -0.29
ABCA4P78363 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.23□□□□□ -0.29
ABCA4P78363 HOMER2P2-201ENST00000451621 847 ntBASIC13.23□□□□□ -0.29
ABCA4P78363 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC13.23□□□□□ -0.29
ABCA4P78363 AL391280.1-201ENST00000506969 1062 ntBASIC13.23□□□□□ -0.29
ABCA4P78363 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC13.23□□□□□ -0.29
ABCA4P78363 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.23□□□□□ -0.29
ABCA4P78363 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
ABCA4P78363 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
ABCA4P78363 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
ABCA4P78363 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC13.22□□□□□ -0.29
ABCA4P78363 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC13.22□□□□□ -0.29
ABCA4P78363 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
ABCA4P78363 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
ABCA4P78363 MPV17-204ENST00000399052 749 ntTSL 4 BASIC13.22□□□□□ -0.29
ABCA4P78363 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.22□□□□□ -0.29
ABCA4P78363 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC13.22□□□□□ -0.29
ABCA4P78363 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC13.22□□□□□ -0.29
ABCA4P78363 EEF1DP1-201ENST00000585891 896 ntBASIC13.22□□□□□ -0.29
ABCA4P78363 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC13.22□□□□□ -0.29
ABCA4P78363 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC13.22□□□□□ -0.29
ABCA4P78363 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC13.22□□□□□ -0.29
ABCA4P78363 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
ABCA4P78363 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
ABCA4P78363 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC13.22□□□□□ -0.29
ABCA4P78363 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
ABCA4P78363 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC13.22□□□□□ -0.29
ABCA4P78363 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC13.22□□□□□ -0.29
ABCA4P78363 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
ABCA4P78363 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC13.22□□□□□ -0.29
ABCA4P78363 AL023775.1-201ENST00000454907 1746 ntBASIC13.22□□□□□ -0.29
ABCA4P78363 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms