Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC10.92□□□□□ -0.66
CKS1BP61024 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CKS1BP61024 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC10.92□□□□□ -0.66
CKS1BP61024 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 MAP3K9-205ENST00000554752 11169 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
CKS1BP61024 HLA-E-201ENST00000376630 2601 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
CKS1BP61024 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 TBL1X-203ENST00000407597 5596 ntTSL 2 BASIC10.91□□□□□ -0.66
CKS1BP61024 AL357143.1-202ENST00000640531 5777 ntTSL 5 BASIC10.91□□□□□ -0.66
CKS1BP61024 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC10.91□□□□□ -0.66
CKS1BP61024 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 DYNC1LI1-201ENST00000273130 2504 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC10.91□□□□□ -0.66
CKS1BP61024 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 AC012569.1-201ENST00000591191 1524 ntBASIC10.91□□□□□ -0.66
CKS1BP61024 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
CKS1BP61024 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC10.91□□□□□ -0.66
CKS1BP61024 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC10.91□□□□□ -0.66
CKS1BP61024 ARPIN-201ENST00000357484 7591 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC10.91□□□□□ -0.66
CKS1BP61024 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC10.91□□□□□ -0.66
CKS1BP61024 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC10.91□□□□□ -0.66
CKS1BP61024 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC10.91□□□□□ -0.66
CKS1BP61024 ISCU-203ENST00000431221 799 ntTSL 2 BASIC10.91□□□□□ -0.66
CKS1BP61024 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC10.91□□□□□ -0.66
CKS1BP61024 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC10.91□□□□□ -0.66
CKS1BP61024 SLC25A6P2-201ENST00000497974 877 ntBASIC10.91□□□□□ -0.66
CKS1BP61024 NMU-205ENST00000511469 756 ntTSL 3 BASIC10.91□□□□□ -0.66
CKS1BP61024 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC10.91□□□□□ -0.66
CKS1BP61024 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC10.91□□□□□ -0.66
CKS1BP61024 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC10.91□□□□□ -0.66
CKS1BP61024 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC10.91□□□□□ -0.66
CKS1BP61024 AC008608.2-201ENST00000606089 416 ntBASIC10.91□□□□□ -0.66
CKS1BP61024 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC10.91□□□□□ -0.66
CKS1BP61024 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC10.91□□□□□ -0.66
CKS1BP61024 AL355877.3-201ENST00000622820 899 ntBASIC10.91□□□□□ -0.66
CKS1BP61024 AC093458.2-201ENST00000623150 629 ntBASIC10.91□□□□□ -0.66
CKS1BP61024 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC10.91□□□□□ -0.66
CKS1BP61024 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC10.91□□□□□ -0.66
CKS1BP61024 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
CKS1BP61024 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC10.91□□□□□ -0.66
CKS1BP61024 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
CKS1BP61024 POU2F2-216ENST00000560558 3282 ntTSL 5 BASIC10.91□□□□□ -0.66
CKS1BP61024 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
CKS1BP61024 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC10.91□□□□□ -0.66
CKS1BP61024 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC10.91□□□□□ -0.66
CKS1BP61024 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 OFD1-201ENST00000340096 3611 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
CKS1BP61024 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC10.91□□□□□ -0.66
CKS1BP61024 AL390755.1-201ENST00000623716 2027 ntBASIC10.91□□□□□ -0.66
CKS1BP61024 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
CKS1BP61024 CDH11-201ENST00000268603 6857 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
CKS1BP61024 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CKS1BP61024 AR-208ENST00000612452 10676 ntTSL 5 BASIC10.9□□□□□ -0.66
CKS1BP61024 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
CKS1BP61024 MYO9B-206ENST00000595618 7623 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CKS1BP61024 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC10.9□□□□□ -0.66
CKS1BP61024 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
CKS1BP61024 AC023024.2-201ENST00000623561 1993 ntBASIC10.9□□□□□ -0.66
CKS1BP61024 UMODL1-205ENST00000408910 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
CKS1BP61024 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CKS1BP61024 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC10.9□□□□□ -0.66
CKS1BP61024 TCAF2-205ENST00000444908 2976 ntTSL 5 BASIC10.9□□□□□ -0.66
CKS1BP61024 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
CKS1BP61024 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC10.9□□□□□ -0.66
CKS1BP61024 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CKS1BP61024 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC10.9□□□□□ -0.66
CKS1BP61024 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
CKS1BP61024 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC10.9□□□□□ -0.66
CKS1BP61024 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
CKS1BP61024 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms