Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ETFA-208ENST00000559602 792 ntTSL 3 BASIC11.64□□□□□ -0.55
FOXA3P55318 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC11.64□□□□□ -0.55
FOXA3P55318 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC11.64□□□□□ -0.55
FOXA3P55318 PAM16-215ENST00000577031 548 ntTSL 4 BASIC11.64□□□□□ -0.55
FOXA3P55318 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC11.64□□□□□ -0.55
FOXA3P55318 AC011467.4-201ENST00000594891 528 ntBASIC11.64□□□□□ -0.55
FOXA3P55318 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC11.64□□□□□ -0.55
FOXA3P55318 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC11.64□□□□□ -0.55
FOXA3P55318 AL078644.1-201ENST00000609881 752 ntBASIC11.64□□□□□ -0.55
FOXA3P55318 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC11.64□□□□□ -0.55
FOXA3P55318 AC092119.3-201ENST00000612618 583 ntBASIC11.64□□□□□ -0.55
FOXA3P55318 BCL10-202ENST00000620248 774 ntTSL 5 BASIC11.64□□□□□ -0.55
FOXA3P55318 AC107918.4-202ENST00000641623 219 ntBASIC11.64□□□□□ -0.55
FOXA3P55318 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC11.64□□□□□ -0.55
FOXA3P55318 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
FOXA3P55318 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC11.64□□□□□ -0.55
FOXA3P55318 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
FOXA3P55318 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
FOXA3P55318 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC11.64□□□□□ -0.55
FOXA3P55318 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
FOXA3P55318 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
FOXA3P55318 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
FOXA3P55318 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC11.63□□□□□ -0.55
FOXA3P55318 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
FOXA3P55318 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC11.63□□□□□ -0.55
FOXA3P55318 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC11.63□□□□□ -0.55
FOXA3P55318 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
FOXA3P55318 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC11.63□□□□□ -0.55
FOXA3P55318 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC11.63□□□□□ -0.55
FOXA3P55318 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 FGFR3P6-201ENST00000457012 610 ntBASIC11.63□□□□□ -0.55
FOXA3P55318 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC11.63□□□□□ -0.55
FOXA3P55318 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC11.63□□□□□ -0.55
FOXA3P55318 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC11.63□□□□□ -0.55
FOXA3P55318 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
FOXA3P55318 OR7E47P-204ENST00000575924 449 ntBASIC11.63□□□□□ -0.55
FOXA3P55318 AC025062.2-201ENST00000605477 670 ntBASIC11.63□□□□□ -0.55
FOXA3P55318 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC11.63□□□□□ -0.55
FOXA3P55318 NPAP1P7-201ENST00000613027 823 ntBASIC11.63□□□□□ -0.55
FOXA3P55318 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC11.63□□□□□ -0.55
FOXA3P55318 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC11.63□□□□□ -0.55
FOXA3P55318 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC11.63□□□□□ -0.55
FOXA3P55318 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC11.63□□□□□ -0.55
FOXA3P55318 GALC-206ENST00000544807 2528 ntTSL 2 BASIC11.63□□□□□ -0.55
FOXA3P55318 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC11.63□□□□□ -0.55
FOXA3P55318 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC11.63□□□□□ -0.55
FOXA3P55318 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC11.63□□□□□ -0.55
FOXA3P55318 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC11.63□□□□□ -0.55
FOXA3P55318 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC11.63□□□□□ -0.55
FOXA3P55318 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC11.63□□□□□ -0.55
FOXA3P55318 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC11.63□□□□□ -0.55
FOXA3P55318 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC11.63□□□□□ -0.55
FOXA3P55318 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
FOXA3P55318 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC11.62□□□□□ -0.55
FOXA3P55318 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC11.62□□□□□ -0.55
FOXA3P55318 MTHFR-210ENST00000641407 2387 ntBASIC11.62□□□□□ -0.55
FOXA3P55318 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms