Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL18A1P39060 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.7■□□□□ 0.74
COL18A1P39060 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL18A1P39060 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL18A1P39060 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL18A1P39060 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL18A1P39060 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.7■□□□□ 0.74
COL18A1P39060 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL18A1P39060 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL18A1P39060 STRN-202ENST00000379213 2254 ntTSL 5 BASIC19.7■□□□□ 0.74
COL18A1P39060 FAS-202ENST00000352159 1722 ntTSL 5 BASIC19.7■□□□□ 0.74
COL18A1P39060 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL18A1P39060 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
COL18A1P39060 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC19.7■□□□□ 0.74
COL18A1P39060 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC19.7■□□□□ 0.74
COL18A1P39060 CHCHD2P9-201ENST00000461726 456 ntBASIC19.7■□□□□ 0.74
COL18A1P39060 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC19.7■□□□□ 0.74
COL18A1P39060 NEU3-207ENST00000534628 746 ntTSL 2 BASIC19.7■□□□□ 0.74
COL18A1P39060 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC19.7■□□□□ 0.74
COL18A1P39060 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC19.7■□□□□ 0.74
COL18A1P39060 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.7■□□□□ 0.74
COL18A1P39060 SALL4P5-201ENST00000419001 1760 ntBASIC19.69■□□□□ 0.74
COL18A1P39060 REXO1L2P-201ENST00000425429 2069 ntBASIC19.69■□□□□ 0.74
COL18A1P39060 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL18A1P39060 KRT18P9-201ENST00000604826 1300 ntBASIC19.69■□□□□ 0.74
COL18A1P39060 CYP51A1P3-201ENST00000400072 1428 ntBASIC19.69■□□□□ 0.74
COL18A1P39060 AL513523.2-202ENST00000427283 2040 ntBASIC19.69■□□□□ 0.74
COL18A1P39060 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC19.69■□□□□ 0.74
COL18A1P39060 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL18A1P39060 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL18A1P39060 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL18A1P39060 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL18A1P39060 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL18A1P39060 RPL7P35-201ENST00000446943 740 ntBASIC19.69■□□□□ 0.74
COL18A1P39060 RPSAP15-201ENST00000448168 861 ntBASIC19.69■□□□□ 0.74
COL18A1P39060 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC19.69■□□□□ 0.74
COL18A1P39060 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL18A1P39060 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
COL18A1P39060 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
COL18A1P39060 AC127024.7-201ENST00000625101 200 ntBASIC19.69■□□□□ 0.74
COL18A1P39060 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL18A1P39060 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL18A1P39060 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL18A1P39060 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL18A1P39060 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
COL18A1P39060 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.69■□□□□ 0.74
COL18A1P39060 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL18A1P39060 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL18A1P39060 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
COL18A1P39060 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC19.68■□□□□ 0.74
COL18A1P39060 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC19.68■□□□□ 0.74
COL18A1P39060 KRT8P28-201ENST00000433288 1390 ntBASIC19.68■□□□□ 0.74
COL18A1P39060 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC19.68■□□□□ 0.74
COL18A1P39060 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL18A1P39060 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL18A1P39060 TSPY25P-201ENST00000429463 745 ntBASIC19.68■□□□□ 0.74
COL18A1P39060 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL18A1P39060 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC19.68■□□□□ 0.74
COL18A1P39060 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC19.68■□□□□ 0.74
COL18A1P39060 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL18A1P39060 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC19.68■□□□□ 0.74
COL18A1P39060 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC19.68■□□□□ 0.74
COL18A1P39060 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL18A1P39060 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL18A1P39060 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
COL18A1P39060 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL18A1P39060 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
COL18A1P39060 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL18A1P39060 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC19.68■□□□□ 0.74
COL18A1P39060 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL18A1P39060 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL18A1P39060 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
COL18A1P39060 AC092850.2-201ENST00000623821 2697 ntBASIC19.68■□□□□ 0.74
COL18A1P39060 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL18A1P39060 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC19.67■□□□□ 0.74
COL18A1P39060 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC19.67■□□□□ 0.74
COL18A1P39060 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
COL18A1P39060 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC19.67■□□□□ 0.74
COL18A1P39060 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL18A1P39060 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC19.67■□□□□ 0.74
COL18A1P39060 AC009145.4-201ENST00000625119 1294 ntBASIC19.67■□□□□ 0.74
COL18A1P39060 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC19.67■□□□□ 0.74
COL18A1P39060 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.67■□□□□ 0.74
COL18A1P39060 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
COL18A1P39060 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL18A1P39060 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms