Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
PTPN4P29074 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.56■□□□□ 0.08
PTPN4P29074 AP3S2-216ENST00000617003 1561 ntBASIC15.56■□□□□ 0.08
PTPN4P29074 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.56■□□□□ 0.08
PTPN4P29074 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.56■□□□□ 0.08
PTPN4P29074 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.56■□□□□ 0.08
PTPN4P29074 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PTPN4P29074 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
PTPN4P29074 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC15.55■□□□□ 0.08
PTPN4P29074 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.55■□□□□ 0.08
PTPN4P29074 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.55■□□□□ 0.08
PTPN4P29074 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
PTPN4P29074 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC15.55■□□□□ 0.08
PTPN4P29074 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 MIR661-201ENST00000384842 89 ntBASIC15.55■□□□□ 0.08
PTPN4P29074 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.55■□□□□ 0.08
PTPN4P29074 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.55■□□□□ 0.08
PTPN4P29074 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.55■□□□□ 0.08
PTPN4P29074 LINC02560-201ENST00000596379 459 ntBASIC15.55■□□□□ 0.08
PTPN4P29074 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.55■□□□□ 0.08
PTPN4P29074 AC003101.2-201ENST00000612557 442 ntBASIC15.55■□□□□ 0.08
PTPN4P29074 AC073592.8-201ENST00000624126 511 ntBASIC15.55■□□□□ 0.08
PTPN4P29074 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.55■□□□□ 0.08
PTPN4P29074 AC008761.3-201ENST00000624803 892 ntBASIC15.55■□□□□ 0.08
PTPN4P29074 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.55■□□□□ 0.08
PTPN4P29074 HFE2-206ENST00000634927 506 ntTSL 4 BASIC15.55■□□□□ 0.08
PTPN4P29074 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
PTPN4P29074 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
PTPN4P29074 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.55■□□□□ 0.08
PTPN4P29074 AC097376.2-205ENST00000610159 5334 ntBASIC15.55■□□□□ 0.08
PTPN4P29074 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.55■□□□□ 0.08
PTPN4P29074 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.55■□□□□ 0.08
PTPN4P29074 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PTPN4P29074 ZBED1P1-201ENST00000502364 1930 ntBASIC15.55■□□□□ 0.08
PTPN4P29074 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
PTPN4P29074 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.54■□□□□ 0.08
PTPN4P29074 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.54■□□□□ 0.08
PTPN4P29074 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.54■□□□□ 0.08
PTPN4P29074 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
PTPN4P29074 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 AC079781.5-202ENST00000641784 3743 ntBASIC15.54■□□□□ 0.08
PTPN4P29074 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.54■□□□□ 0.08
PTPN4P29074 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
PTPN4P29074 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 AC015922.1-201ENST00000421102 1152 ntBASIC15.54■□□□□ 0.08
PTPN4P29074 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.54■□□□□ 0.08
PTPN4P29074 AC245100.5-201ENST00000452108 331 ntBASIC15.54■□□□□ 0.08
PTPN4P29074 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PTPN4P29074 AC027369.6-201ENST00000525520 931 ntBASIC15.54■□□□□ 0.08
PTPN4P29074 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.54■□□□□ 0.08
PTPN4P29074 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.54■□□□□ 0.08
PTPN4P29074 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.54■□□□□ 0.08
PTPN4P29074 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.54■□□□□ 0.08
PTPN4P29074 AF228730.6-201ENST00000641497 218 ntBASIC15.54■□□□□ 0.08
PTPN4P29074 AC084121.3-201ENST00000641716 218 ntBASIC15.54■□□□□ 0.08
PTPN4P29074 AC105233.6-201ENST00000642093 218 ntBASIC15.54■□□□□ 0.08
PTPN4P29074 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms