Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
COL3A1P02461 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC19.94■□□□□ 0.78
COL3A1P02461 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC19.94■□□□□ 0.78
COL3A1P02461 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC19.94■□□□□ 0.78
COL3A1P02461 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL3A1P02461 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
COL3A1P02461 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC19.94■□□□□ 0.78
COL3A1P02461 RBM38-204ENST00000371219 760 ntTSL 2 BASIC19.94■□□□□ 0.78
COL3A1P02461 APOA2-204ENST00000464492 530 ntTSL 3 BASIC19.94■□□□□ 0.78
COL3A1P02461 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC19.94■□□□□ 0.78
COL3A1P02461 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC19.94■□□□□ 0.78
COL3A1P02461 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL3A1P02461 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC19.94■□□□□ 0.78
COL3A1P02461 AIRN-201ENST00000601203 4374 ntBASIC19.94■□□□□ 0.78
COL3A1P02461 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC19.94■□□□□ 0.78
COL3A1P02461 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL3A1P02461 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL3A1P02461 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC19.94■□□□□ 0.78
COL3A1P02461 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL3A1P02461 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL3A1P02461 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC19.94■□□□□ 0.78
COL3A1P02461 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC19.94■□□□□ 0.78
COL3A1P02461 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
COL3A1P02461 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL3A1P02461 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL3A1P02461 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC19.94■□□□□ 0.78
COL3A1P02461 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC19.94■□□□□ 0.78
COL3A1P02461 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC19.94■□□□□ 0.78
COL3A1P02461 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL3A1P02461 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL3A1P02461 RPS3-201ENST00000278572 907 ntTSL 3 BASIC19.93■□□□□ 0.78
COL3A1P02461 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL3A1P02461 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL3A1P02461 SMS-201ENST00000379404 1174 ntTSL 3 BASIC19.93■□□□□ 0.78
COL3A1P02461 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL3A1P02461 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC19.93■□□□□ 0.78
COL3A1P02461 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL3A1P02461 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC19.93■□□□□ 0.78
COL3A1P02461 VPS18-202ENST00000558474 873 ntTSL 3 BASIC19.93■□□□□ 0.78
COL3A1P02461 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC19.93■□□□□ 0.78
COL3A1P02461 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC19.93■□□□□ 0.78
COL3A1P02461 AC011270.2-201ENST00000624293 2550 ntBASIC19.93■□□□□ 0.78
COL3A1P02461 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC19.93■□□□□ 0.78
COL3A1P02461 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC19.93■□□□□ 0.78
COL3A1P02461 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL3A1P02461 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL3A1P02461 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL3A1P02461 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL3A1P02461 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
COL3A1P02461 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL3A1P02461 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL3A1P02461 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
COL3A1P02461 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL3A1P02461 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL3A1P02461 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
COL3A1P02461 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
COL3A1P02461 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL3A1P02461 AC013726.1-201ENST00000563747 2285 ntBASIC19.93■□□□□ 0.78
COL3A1P02461 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC19.92■□□□□ 0.78
COL3A1P02461 CDC23-208ENST00000505120 455 ntTSL 3 BASIC19.92■□□□□ 0.78
COL3A1P02461 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
COL3A1P02461 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 AC243960.2-201ENST00000600996 747 ntBASIC19.92■□□□□ 0.78
COL3A1P02461 MIR6799-201ENST00000620297 69 ntBASIC19.92■□□□□ 0.78
COL3A1P02461 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
COL3A1P02461 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
COL3A1P02461 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC19.92■□□□□ 0.78
COL3A1P02461 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
COL3A1P02461 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 BRWD1P1-201ENST00000401091 371 ntBASIC19.92■□□□□ 0.78
COL3A1P02461 BTBD6P1-201ENST00000412176 1267 ntBASIC19.92■□□□□ 0.78
COL3A1P02461 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC19.92■□□□□ 0.78
COL3A1P02461 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC19.92■□□□□ 0.78
COL3A1P02461 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC19.92■□□□□ 0.78
COL3A1P02461 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC19.92■□□□□ 0.78
COL3A1P02461 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC19.92■□□□□ 0.78
COL3A1P02461 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL3A1P02461 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC19.92■□□□□ 0.78
COL3A1P02461 AC244157.2-201ENST00000616239 1006 ntBASIC19.92■□□□□ 0.78
COL3A1P02461 AC022748.3-201ENST00000621828 275 ntBASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms