Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 AC009486.1-201ENST00000569860 813 ntBASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 AL033527.4-201ENST00000641026 673 ntBASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 SSR4P1-203ENST00000599569 2260 ntBASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 AP001282.1-201ENST00000531301 1499 ntBASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 AC005229.1-201ENST00000392885 409 ntBASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 TARDBPP1-201ENST00000442013 1203 ntBASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 AC119751.2-201ENST00000504529 210 ntBASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 FAM8A2P-201ENST00000528813 1142 ntBASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 MIR5189-201ENST00000577370 114 ntBASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 MIR4259-201ENST00000584466 101 ntBASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TMX2-CTNND1H3BSU7 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC15.17■□□□□ 0.02
TMX2-CTNND1H3BSU7 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms