Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 TCAF2P1-201ENST00000291129 2421 ntBASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 AC025181.2-201ENST00000606994 802 ntBASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 AC004908.3-201ENST00000610248 625 ntBASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.43■□□□□ 0.06
VPS9D1Q9Y2B5 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 TSSK5P-201ENST00000423978 907 ntBASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 AL512638.1-201ENST00000457493 794 ntBASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 AC068985.1-201ENST00000463297 703 ntTSL 5 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 MEIS3P1-201ENST00000495167 958 ntBASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 DUX4L27-201ENST00000554796 1261 ntBASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 PRR29-204ENST00000577953 565 ntTSL 4 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 AC008750.5-201ENST00000595500 473 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 AL390754.1-201ENST00000619088 582 ntBASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS9D1Q9Y2B5 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS9D1Q9Y2B5 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.41■□□□□ 0.06
VPS9D1Q9Y2B5 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.41■□□□□ 0.06
VPS9D1Q9Y2B5 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS9D1Q9Y2B5 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS9D1Q9Y2B5 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS9D1Q9Y2B5 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS9D1Q9Y2B5 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS9D1Q9Y2B5 DBET-201ENST00000630918 3363 ntBASIC15.41■□□□□ 0.06
VPS9D1Q9Y2B5 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS9D1Q9Y2B5 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS9D1Q9Y2B5 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS9D1Q9Y2B5 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms