Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CHMP1AQ9HD42 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 CR383656.2-201ENST00000548656 2254 ntBASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 AC027307.2-201ENST00000591252 911 ntBASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 AL359183.1-201ENST00000623796 2132 ntBASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 AC005840.4-201ENST00000541242 2494 ntBASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 CELP-203ENST00000624767 2414 ntTSL 5 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
CHMP1AQ9HD42 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AC004987.2-201ENST00000395959 1148 ntBASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AL135744.1-201ENST00000565098 629 ntBASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AC061975.2-201ENST00000581722 295 ntBASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AC073389.1-201ENST00000595595 795 ntBASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC13.37□□□□□ -0.27
CHMP1AQ9HD42 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms