Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 AC092850.2-201ENST00000623821 2697 ntBASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 AL583805.1-201ENST00000391389 531 ntBASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 RPL8P2-201ENST00000430538 502 ntBASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 FTH1P22-201ENST00000456305 520 ntBASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 AP002803.1-201ENST00000528836 498 ntBASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 MIR4649-201ENST00000582839 64 ntBASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 NAT9-220ENST00000582870 896 ntTSL 5 BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 MIR3188-201ENST00000583494 85 ntBASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 LINC02199-201ENST00000506655 2702 ntBASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 TMBIM7P-202ENST00000641474 1516 ntBASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 BID-213ENST00000615414 2236 ntTSL 5 BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 AC010234.1-201ENST00000494599 870 ntBASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 AC026410.1-201ENST00000507366 1101 ntBASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK3Q9BYB0 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 AC097065.1-201ENST00000425737 517 ntBASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 DNM1P30-201ENST00000563586 452 ntBASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 STRN-202ENST00000379213 2254 ntTSL 5 BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 REXO1L2P-201ENST00000425429 2069 ntBASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 PTPA-215ENST00000432124 567 ntTSL 4 BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 DUTP3-201ENST00000450025 415 ntBASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC19.34■□□□□ 0.69
SHANK3Q9BYB0 KRT8P28-201ENST00000433288 1390 ntBASIC19.33■□□□□ 0.69
SHANK3Q9BYB0 RAN-210ENST00000541630 1475 ntTSL 2 BASIC19.33■□□□□ 0.69
SHANK3Q9BYB0 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHANK3Q9BYB0 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHANK3Q9BYB0 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC19.33■□□□□ 0.69
SHANK3Q9BYB0 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SHANK3Q9BYB0 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHANK3Q9BYB0 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHANK3Q9BYB0 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SHANK3Q9BYB0 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHANK3Q9BYB0 AC025271.4-201ENST00000621477 1726 ntBASIC19.33■□□□□ 0.68
SHANK3Q9BYB0 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHANK3Q9BYB0 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC19.33■□□□□ 0.68
SHANK3Q9BYB0 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC19.33■□□□□ 0.68
SHANK3Q9BYB0 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms