Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 AC007551.1-201ENST00000457394 519 ntBASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 RHOXF1P1-202ENST00000635473 501 ntBASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 USE1-206ENST00000595101 1776 ntTSL 2 BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RPAP1Q9BWH6 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 AC134312.5-201ENST00000568031 1313 ntBASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 RPL5P21-201ENST00000404620 815 ntBASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 AC093433.1-201ENST00000458048 571 ntBASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 DUX4L45-201ENST00000566406 1057 ntBASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 AC107373.2-201ENST00000607735 490 ntBASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 AL645728.2-202ENST00000641679 227 ntBASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 GSN-215ENST00000545652 2428 ntTSL 2 BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.63■□□□□ 0.57
RPAP1Q9BWH6 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 AC020907.1-201ENST00000616460 1350 ntBASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 AC084364.1-201ENST00000551967 1556 ntBASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 ZBTB12BP-201ENST00000314232 1122 ntBASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 YBX1P6-201ENST00000442962 1002 ntBASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 GAPDHP40-201ENST00000505218 1006 ntBASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 RN7SL219P-201ENST00000582872 296 ntBASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 AC244669.2-201ENST00000612320 853 ntBASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 MFF-204ENST00000353339 2186 ntTSL 5 BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RPAP1Q9BWH6 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC18.61■□□□□ 0.57
RPAP1Q9BWH6 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RPAP1Q9BWH6 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms