Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 AC106881.1-201ENST00000605849 3329 ntBASIC11.61□□□□□ -0.55
LINC00477Q96M19 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 STOM-202ENST00000347359 870 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC11.61□□□□□ -0.55
LINC00477Q96M19 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 RPL30-202ENST00000396070 440 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 AL133267.1-201ENST00000398220 340 ntBASIC11.61□□□□□ -0.55
LINC00477Q96M19 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 AC004461.1-201ENST00000412461 403 ntBASIC11.61□□□□□ -0.55
LINC00477Q96M19 FAM58DP-201ENST00000428076 619 ntBASIC11.61□□□□□ -0.55
LINC00477Q96M19 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 YBX1P5-201ENST00000509441 847 ntBASIC11.61□□□□□ -0.55
LINC00477Q96M19 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 AL645728.2-202ENST00000641679 227 ntBASIC11.61□□□□□ -0.55
LINC00477Q96M19 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 TK1-203ENST00000588734 1681 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 AC232323.1-201ENST00000540724 2099 ntBASIC11.61□□□□□ -0.55
LINC00477Q96M19 REXO1L5P-201ENST00000622260 2098 ntBASIC11.61□□□□□ -0.55
LINC00477Q96M19 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 AL009178.2-201ENST00000597278 2719 ntBASIC11.6□□□□□ -0.55
LINC00477Q96M19 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 GRAMD4P3-201ENST00000621665 1669 ntBASIC11.6□□□□□ -0.55
LINC00477Q96M19 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 SLED1-202ENST00000512051 380 ntBASIC11.6□□□□□ -0.55
LINC00477Q96M19 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 AL079307.3-201ENST00000556114 283 ntBASIC11.6□□□□□ -0.55
LINC00477Q96M19 AC026150.2-201ENST00000564693 1156 ntBASIC11.6□□□□□ -0.55
LINC00477Q96M19 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC11.6□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms