Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.21■□□□□ 0.03
TTC28Q96AY4 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
TTC28Q96AY4 AC022121.1-201ENST00000484584 579 ntBASIC15.21■□□□□ 0.02
TTC28Q96AY4 AC090136.2-201ENST00000517809 420 ntBASIC15.21■□□□□ 0.02
TTC28Q96AY4 HERC2P11-201ENST00000562845 725 ntBASIC15.21■□□□□ 0.02
TTC28Q96AY4 AC100756.2-201ENST00000569537 736 ntBASIC15.21■□□□□ 0.02
TTC28Q96AY4 APOC1-209ENST00000592885 562 ntTSL 3 BASIC15.21■□□□□ 0.02
TTC28Q96AY4 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
TTC28Q96AY4 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.21■□□□□ 0.02
TTC28Q96AY4 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.21■□□□□ 0.02
TTC28Q96AY4 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.02
TTC28Q96AY4 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
TTC28Q96AY4 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
TTC28Q96AY4 MST1L-201ENST00000442552 2185 ntBASIC15.21■□□□□ 0.02
TTC28Q96AY4 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TTC28Q96AY4 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 AC087289.5-201ENST00000586076 3175 ntBASIC15.2■□□□□ 0.02
TTC28Q96AY4 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TTC28Q96AY4 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TTC28Q96AY4 AC136604.1-202ENST00000425471 771 ntBASIC15.2■□□□□ 0.02
TTC28Q96AY4 AC092896.1-201ENST00000465850 380 ntBASIC15.2■□□□□ 0.02
TTC28Q96AY4 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 CSTP2-201ENST00000610599 398 ntBASIC15.2■□□□□ 0.02
TTC28Q96AY4 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
TTC28Q96AY4 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TTC28Q96AY4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TTC28Q96AY4 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TTC28Q96AY4 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TTC28Q96AY4 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TTC28Q96AY4 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TTC28Q96AY4 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TTC28Q96AY4 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TTC28Q96AY4 AL121949.3-201ENST00000406684 385 ntBASIC15.2■□□□□ 0.02
TTC28Q96AY4 RN7SL23P-201ENST00000484055 275 ntBASIC15.2■□□□□ 0.02
TTC28Q96AY4 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 DUX4L47-201ENST00000566374 394 ntBASIC15.2■□□□□ 0.02
TTC28Q96AY4 TRMT112P3-201ENST00000580149 358 ntBASIC15.2■□□□□ 0.02
TTC28Q96AY4 RN7SL357P-201ENST00000581065 298 ntBASIC15.2■□□□□ 0.02
TTC28Q96AY4 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TTC28Q96AY4 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TTC28Q96AY4 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC15.2■□□□□ 0.02
TTC28Q96AY4 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TTC28Q96AY4 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
TTC28Q96AY4 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 AC020910.5-201ENST00000623668 1865 ntBASIC15.19■□□□□ 0.02
TTC28Q96AY4 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TTC28Q96AY4 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TTC28Q96AY4 CSNK1G2P1-201ENST00000442675 955 ntBASIC15.19■□□□□ 0.02
TTC28Q96AY4 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 SOD2-205ENST00000444946 917 ntTSL 2 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TTC28Q96AY4 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TTC28Q96AY4 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TTC28Q96AY4 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TTC28Q96AY4 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TTC28Q96AY4 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.19■□□□□ 0.02
TTC28Q96AY4 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TTC28Q96AY4 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms