Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
DEPDC4Q8N2C3 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
DEPDC4Q8N2C3 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
DEPDC4Q8N2C3 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
DEPDC4Q8N2C3 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
DEPDC4Q8N2C3 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
DEPDC4Q8N2C3 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
DEPDC4Q8N2C3 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
DEPDC4Q8N2C3 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
DEPDC4Q8N2C3 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
DEPDC4Q8N2C3 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.48□□□□□ -0.09
DEPDC4Q8N2C3 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.48□□□□□ -0.09
DEPDC4Q8N2C3 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
DEPDC4Q8N2C3 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AC092474.2-201ENST00000424288 719 ntBASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AC023141.5-201ENST00000458585 616 ntBASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AL135744.1-201ENST00000565098 629 ntBASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 MIR4313-201ENST00000580760 101 ntBASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AC008686.1-203ENST00000591826 463 ntTSL 2 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AC022145.2-201ENST00000598203 171 ntBASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
DEPDC4Q8N2C3 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms