Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13CQ709C8 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC12.53□□□□□ -0.4
VPS13CQ709C8 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13CQ709C8 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.53□□□□□ -0.4
VPS13CQ709C8 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13CQ709C8 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
VPS13CQ709C8 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
VPS13CQ709C8 AL627231.1-201ENST00000394467 1125 ntBASIC12.52□□□□□ -0.4
VPS13CQ709C8 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC12.52□□□□□ -0.4
VPS13CQ709C8 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC12.52□□□□□ -0.4
VPS13CQ709C8 AC005632.3-201ENST00000605544 308 ntBASIC12.52□□□□□ -0.4
VPS13CQ709C8 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC12.52□□□□□ -0.4
VPS13CQ709C8 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC12.52□□□□□ -0.4
VPS13CQ709C8 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.52□□□□□ -0.4
VPS13CQ709C8 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC12.52□□□□□ -0.4
VPS13CQ709C8 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
VPS13CQ709C8 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.4
VPS13CQ709C8 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
VPS13CQ709C8 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC12.52□□□□□ -0.4
VPS13CQ709C8 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13CQ709C8 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 AL353637.1-201ENST00000451571 732 ntBASIC12.52□□□□□ -0.41
VPS13CQ709C8 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 AC022616.1-201ENST00000518688 554 ntBASIC12.52□□□□□ -0.41
VPS13CQ709C8 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13CQ709C8 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 AC002472.4-201ENST00000641915 272 ntBASIC12.52□□□□□ -0.41
VPS13CQ709C8 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13CQ709C8 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 SHC1P1-201ENST00000425230 1745 ntBASIC12.52□□□□□ -0.41
VPS13CQ709C8 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13CQ709C8 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13CQ709C8 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13CQ709C8 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 NSD1-211ENST00000511258 809 ntTSL 3 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.41
VPS13CQ709C8 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13CQ709C8 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13CQ709C8 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13CQ709C8 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
VPS13CQ709C8 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 AC242376.2-201ENST00000619355 883 ntBASIC12.51□□□□□ -0.41
VPS13CQ709C8 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 FAM90A7P-201ENST00000382628 1395 ntBASIC12.51□□□□□ -0.41
VPS13CQ709C8 FAM90A23P-201ENST00000400136 1395 ntBASIC12.51□□□□□ -0.41
VPS13CQ709C8 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 KLF2P1-201ENST00000447438 1042 ntBASIC12.51□□□□□ -0.41
VPS13CQ709C8 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 AC025262.2-201ENST00000623975 1056 ntBASIC12.51□□□□□ -0.41
VPS13CQ709C8 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
VPS13CQ709C8 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 MIR3677-201ENST00000578964 60 ntBASIC12.51□□□□□ -0.41
VPS13CQ709C8 AL157813.1-201ENST00000612996 587 ntBASIC12.51□□□□□ -0.41
VPS13CQ709C8 AC148477.9-201ENST00000623974 539 ntBASIC12.51□□□□□ -0.41
VPS13CQ709C8 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC12.51□□□□□ -0.41
VPS13CQ709C8 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms