Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
CTR9Q6PD62 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC18.28■□□□□ 0.52
CTR9Q6PD62 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTR9Q6PD62 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTR9Q6PD62 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTR9Q6PD62 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTR9Q6PD62 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTR9Q6PD62 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTR9Q6PD62 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC18.28■□□□□ 0.52
CTR9Q6PD62 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC18.28■□□□□ 0.52
CTR9Q6PD62 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CTR9Q6PD62 FTH1P14-201ENST00000482930 551 ntBASIC18.28■□□□□ 0.52
CTR9Q6PD62 AC004066.1-201ENST00000502488 802 ntBASIC18.28■□□□□ 0.52
CTR9Q6PD62 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CTR9Q6PD62 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC18.28■□□□□ 0.52
CTR9Q6PD62 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC18.28■□□□□ 0.52
CTR9Q6PD62 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.28■□□□□ 0.52
CTR9Q6PD62 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18.28■□□□□ 0.52
CTR9Q6PD62 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC18.28■□□□□ 0.52
CTR9Q6PD62 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTR9Q6PD62 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CTR9Q6PD62 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTR9Q6PD62 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
CTR9Q6PD62 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTR9Q6PD62 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC18.28■□□□□ 0.52
CTR9Q6PD62 AC136621.1-201ENST00000624017 2304 ntBASIC18.28■□□□□ 0.52
CTR9Q6PD62 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CTR9Q6PD62 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CTR9Q6PD62 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CTR9Q6PD62 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTR9Q6PD62 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTR9Q6PD62 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CTR9Q6PD62 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTR9Q6PD62 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CTR9Q6PD62 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 AC148477.4-201ENST00000613430 1793 ntBASIC18.27■□□□□ 0.52
CTR9Q6PD62 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTR9Q6PD62 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CTR9Q6PD62 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTR9Q6PD62 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CTR9Q6PD62 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTR9Q6PD62 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CTR9Q6PD62 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTR9Q6PD62 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTR9Q6PD62 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTR9Q6PD62 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTR9Q6PD62 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 AC104457.1-201ENST00000401024 814 ntBASIC18.27■□□□□ 0.52
CTR9Q6PD62 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 AC244669.2-201ENST00000612320 853 ntBASIC18.27■□□□□ 0.52
CTR9Q6PD62 MIR6805-201ENST00000615055 62 ntBASIC18.27■□□□□ 0.52
CTR9Q6PD62 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTR9Q6PD62 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CTR9Q6PD62 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTR9Q6PD62 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTR9Q6PD62 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTR9Q6PD62 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CTR9Q6PD62 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CTR9Q6PD62 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTR9Q6PD62 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTR9Q6PD62 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
CTR9Q6PD62 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CTR9Q6PD62 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CTR9Q6PD62 AL158070.2-201ENST00000623713 1621 ntBASIC18.27■□□□□ 0.51
CTR9Q6PD62 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.27■□□□□ 0.51
CTR9Q6PD62 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.27■□□□□ 0.51
CTR9Q6PD62 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTR9Q6PD62 AC087481.3-201ENST00000602886 1894 ntBASIC18.26■□□□□ 0.51
CTR9Q6PD62 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTR9Q6PD62 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CTR9Q6PD62 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.26■□□□□ 0.51
CTR9Q6PD62 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTR9Q6PD62 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CTR9Q6PD62 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTR9Q6PD62 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTR9Q6PD62 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC18.26■□□□□ 0.51
CTR9Q6PD62 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC18.26■□□□□ 0.51
CTR9Q6PD62 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTR9Q6PD62 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.26■□□□□ 0.51
CTR9Q6PD62 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTR9Q6PD62 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTR9Q6PD62 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTR9Q6PD62 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTR9Q6PD62 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC18.26■□□□□ 0.51
CTR9Q6PD62 BOLA2P3-201ENST00000404566 256 ntBASIC18.26■□□□□ 0.51
CTR9Q6PD62 KLF2P2-201ENST00000416807 1039 ntBASIC18.26■□□□□ 0.51
CTR9Q6PD62 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC18.26■□□□□ 0.51
CTR9Q6PD62 AC007551.1-201ENST00000457394 519 ntBASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms