Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
RNF43Q68DV7 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.22■□□□□ 0.19
RNF43Q68DV7 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF43Q68DV7 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RNF43Q68DV7 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.22■□□□□ 0.19
RNF43Q68DV7 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RNF43Q68DV7 COX11-210ENST00000639671 696 ntBASIC16.22■□□□□ 0.19
RNF43Q68DV7 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
RNF43Q68DV7 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF43Q68DV7 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RNF43Q68DV7 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RNF43Q68DV7 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RNF43Q68DV7 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RNF43Q68DV7 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF43Q68DV7 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RNF43Q68DV7 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RNF43Q68DV7 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.22■□□□□ 0.19
RNF43Q68DV7 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.22■□□□□ 0.19
RNF43Q68DV7 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.22■□□□□ 0.19
RNF43Q68DV7 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF43Q68DV7 CICP23-201ENST00000605013 2741 ntBASIC16.22■□□□□ 0.19
RNF43Q68DV7 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RNF43Q68DV7 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF43Q68DV7 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF43Q68DV7 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF43Q68DV7 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF43Q68DV7 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF43Q68DV7 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF43Q68DV7 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 AL607033.1-201ENST00000623900 1599 ntBASIC16.21■□□□□ 0.19
RNF43Q68DV7 NORAD-201ENST00000565493 5339 ntBASIC16.21■□□□□ 0.19
RNF43Q68DV7 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RNF43Q68DV7 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF43Q68DV7 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RNF43Q68DV7 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
RNF43Q68DV7 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC16.21■□□□□ 0.18
RNF43Q68DV7 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RNF43Q68DV7 AC087481.3-201ENST00000602886 1894 ntBASIC16.2■□□□□ 0.18
RNF43Q68DV7 AC007191.1-201ENST00000623179 2995 ntBASIC16.2■□□□□ 0.18
RNF43Q68DV7 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.2■□□□□ 0.18
RNF43Q68DV7 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF43Q68DV7 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF43Q68DV7 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF43Q68DV7 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF43Q68DV7 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC16.2■□□□□ 0.18
RNF43Q68DV7 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.2■□□□□ 0.18
RNF43Q68DV7 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF43Q68DV7 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RNF43Q68DV7 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF43Q68DV7 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.2■□□□□ 0.18
RNF43Q68DV7 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF43Q68DV7 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF43Q68DV7 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF43Q68DV7 AC123567.1-201ENST00000548294 1261 ntBASIC16.2■□□□□ 0.18
RNF43Q68DV7 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF43Q68DV7 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.2■□□□□ 0.18
RNF43Q68DV7 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.2■□□□□ 0.18
RNF43Q68DV7 AC000095.1-201ENST00000603208 874 ntBASIC16.2■□□□□ 0.18
RNF43Q68DV7 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF43Q68DV7 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RNF43Q68DV7 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF43Q68DV7 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RNF43Q68DV7 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF43Q68DV7 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF43Q68DV7 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
RNF43Q68DV7 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF43Q68DV7 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms