Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL354718.3-201ENST00000616414 581 ntBASIC14.89□□□□□ -0.03
COL28A1Q2UY09 CR382287.1-201ENST00000623954 586 ntBASIC14.89□□□□□ -0.03
COL28A1Q2UY09 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 AHCYP2-201ENST00000430630 1300 ntBASIC14.89□□□□□ -0.03
COL28A1Q2UY09 MSTO2P-201ENST00000314835 1709 ntBASIC14.89□□□□□ -0.03
COL28A1Q2UY09 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 AC126755.1-201ENST00000525846 6405 ntBASIC14.88□□□□□ -0.03
COL28A1Q2UY09 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 HNRNPA1P32-201ENST00000396326 963 ntBASIC14.88□□□□□ -0.03
COL28A1Q2UY09 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 AC104982.3-201ENST00000581995 514 ntBASIC14.88□□□□□ -0.03
COL28A1Q2UY09 LINC01115-203ENST00000606068 577 ntBASIC14.88□□□□□ -0.03
COL28A1Q2UY09 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL28A1Q2UY09 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 AL596087.1-201ENST00000400979 1969 ntBASIC14.87□□□□□ -0.03
COL28A1Q2UY09 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 AC126177.1-201ENST00000547829 2218 ntBASIC14.87□□□□□ -0.03
COL28A1Q2UY09 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 CSH2-202ENST00000345366 598 ntTSL 5 BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 ATP6V0CP2-201ENST00000469409 207 ntBASIC14.87□□□□□ -0.03
COL28A1Q2UY09 FTLP10-202ENST00000505798 471 ntBASIC14.87□□□□□ -0.03
COL28A1Q2UY09 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 AHRR-211ENST00000515206 462 ntTSL 5 BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC14.87□□□□□ -0.03
COL28A1Q2UY09 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms