Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC12.5□□□□□ -0.41
CX3CL1P78423 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC12.5□□□□□ -0.41
CX3CL1P78423 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC12.5□□□□□ -0.41
CX3CL1P78423 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC12.5□□□□□ -0.41
CX3CL1P78423 SSH2-210ENST00000582084 560 ntTSL 3 BASIC12.5□□□□□ -0.41
CX3CL1P78423 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CX3CL1P78423 AL844908.2-201ENST00000609461 460 ntBASIC12.5□□□□□ -0.41
CX3CL1P78423 AC074044.1-201ENST00000609673 707 ntBASIC12.5□□□□□ -0.41
CX3CL1P78423 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC12.5□□□□□ -0.41
CX3CL1P78423 AL109936.8-201ENST00000641772 604 ntBASIC12.5□□□□□ -0.41
CX3CL1P78423 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC12.5□□□□□ -0.41
CX3CL1P78423 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC12.5□□□□□ -0.41
CX3CL1P78423 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
CX3CL1P78423 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC12.5□□□□□ -0.41
CX3CL1P78423 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.5□□□□□ -0.41
CX3CL1P78423 AC090616.6-203ENST00000579186 1945 ntBASIC12.5□□□□□ -0.41
CX3CL1P78423 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
CX3CL1P78423 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC12.5□□□□□ -0.41
CX3CL1P78423 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CX3CL1P78423 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CX3CL1P78423 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC12.5□□□□□ -0.41
CX3CL1P78423 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CX3CL1P78423 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC12.49□□□□□ -0.41
CX3CL1P78423 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CL1P78423 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CX3CL1P78423 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CL1P78423 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
CX3CL1P78423 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CL1P78423 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC12.49□□□□□ -0.41
CX3CL1P78423 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CL1P78423 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 AC074338.1-201ENST00000416825 156 ntBASIC12.49□□□□□ -0.41
CX3CL1P78423 RAD18-204ENST00000418463 563 ntTSL 4 BASIC12.49□□□□□ -0.41
CX3CL1P78423 RAD18-205ENST00000421052 582 ntTSL 3 BASIC12.49□□□□□ -0.41
CX3CL1P78423 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CL1P78423 BASP1P1-201ENST00000430708 665 ntBASIC12.49□□□□□ -0.41
CX3CL1P78423 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC12.49□□□□□ -0.41
CX3CL1P78423 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC12.49□□□□□ -0.41
CX3CL1P78423 ZNF890P-202ENST00000530367 1156 ntBASIC12.49□□□□□ -0.41
CX3CL1P78423 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CL1P78423 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC12.49□□□□□ -0.41
CX3CL1P78423 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CL1P78423 AC044860.1-202ENST00000559481 777 ntBASIC12.49□□□□□ -0.41
CX3CL1P78423 DUT-210ENST00000559935 569 ntTSL 3 BASIC12.49□□□□□ -0.41
CX3CL1P78423 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC12.49□□□□□ -0.41
CX3CL1P78423 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC12.49□□□□□ -0.41
CX3CL1P78423 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CL1P78423 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CL1P78423 AL390955.2-201ENST00000603032 514 ntBASIC12.49□□□□□ -0.41
CX3CL1P78423 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CX3CL1P78423 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
CX3CL1P78423 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CL1P78423 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CL1P78423 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC12.49□□□□□ -0.41
CX3CL1P78423 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CL1P78423 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CL1P78423 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CL1P78423 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CL1P78423 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CL1P78423 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CL1P78423 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CL1P78423 PGR-210ENST00000619228 3038 ntTSL 5 BASIC12.48□□□□□ -0.41
CX3CL1P78423 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
CX3CL1P78423 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CL1P78423 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CL1P78423 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.48□□□□□ -0.41
CX3CL1P78423 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CL1P78423 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms