Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AC026434.2-201ENST00000506094 1078 ntBASIC12.55□□□□□ -0.4
LMO4P61968 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC12.55□□□□□ -0.4
LMO4P61968 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC12.55□□□□□ -0.4
LMO4P61968 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC12.55□□□□□ -0.4
LMO4P61968 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC12.55□□□□□ -0.4
LMO4P61968 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC12.55□□□□□ -0.4
LMO4P61968 AL139099.5-201ENST00000635274 300 ntBASIC12.55□□□□□ -0.4
LMO4P61968 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 GRN-222ENST00000639447 1314 ntTSL 2 BASIC12.55□□□□□ -0.4
LMO4P61968 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
LMO4P61968 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.4
LMO4P61968 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
LMO4P61968 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC12.54□□□□□ -0.4
LMO4P61968 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.54□□□□□ -0.4
LMO4P61968 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC12.54□□□□□ -0.4
LMO4P61968 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC12.54□□□□□ -0.4
LMO4P61968 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 KRT8P4-201ENST00000509735 1454 ntBASIC12.54□□□□□ -0.4
LMO4P61968 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC12.54□□□□□ -0.4
LMO4P61968 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC12.54□□□□□ -0.4
LMO4P61968 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC12.54□□□□□ -0.4
LMO4P61968 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
LMO4P61968 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 POM121L10P-201ENST00000436994 1285 ntBASIC12.54□□□□□ -0.4
LMO4P61968 CHMP1AP1-201ENST00000445563 662 ntBASIC12.54□□□□□ -0.4
LMO4P61968 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC12.54□□□□□ -0.4
LMO4P61968 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC12.54□□□□□ -0.4
LMO4P61968 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC12.54□□□□□ -0.4
LMO4P61968 NCK2-206ENST00000522586 490 ntTSL 5 BASIC12.54□□□□□ -0.4
LMO4P61968 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC12.54□□□□□ -0.4
LMO4P61968 RNF41-210ENST00000552244 716 ntTSL 3 BASIC12.54□□□□□ -0.4
LMO4P61968 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC12.54□□□□□ -0.4
LMO4P61968 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC12.54□□□□□ -0.4
LMO4P61968 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 AL606495.2-201ENST00000605867 535 ntBASIC12.54□□□□□ -0.4
LMO4P61968 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
LMO4P61968 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC12.54□□□□□ -0.4
LMO4P61968 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC12.54□□□□□ -0.4
LMO4P61968 SLC9A7P1-202ENST00000556476 2239 ntBASIC12.54□□□□□ -0.4
LMO4P61968 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC12.54□□□□□ -0.4
LMO4P61968 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC12.54□□□□□ -0.4
LMO4P61968 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
LMO4P61968 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
LMO4P61968 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC12.54□□□□□ -0.4
LMO4P61968 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC12.54□□□□□ -0.4
LMO4P61968 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LMO4P61968 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC12.53□□□□□ -0.4
LMO4P61968 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
LMO4P61968 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 AC012508.2-201ENST00000567613 1472 ntBASIC12.53□□□□□ -0.4
LMO4P61968 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC12.53□□□□□ -0.4
LMO4P61968 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC12.53□□□□□ -0.4
LMO4P61968 AC018735.1-201ENST00000437208 1502 ntBASIC12.53□□□□□ -0.4
LMO4P61968 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 AC020658.6-201ENST00000623564 1870 ntBASIC12.53□□□□□ -0.4
LMO4P61968 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC12.53□□□□□ -0.4
LMO4P61968 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms