Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP11P51784 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP11P51784 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP11P51784 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP11P51784 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
USP11P51784 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
USP11P51784 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.37■□□□□ 0.37
USP11P51784 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP11P51784 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP11P51784 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP11P51784 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP11P51784 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP11P51784 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP11P51784 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC17.36■□□□□ 0.37
USP11P51784 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
USP11P51784 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.36■□□□□ 0.37
USP11P51784 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.36■□□□□ 0.37
USP11P51784 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
USP11P51784 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.36■□□□□ 0.37
USP11P51784 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
USP11P51784 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC17.36■□□□□ 0.37
USP11P51784 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC17.36■□□□□ 0.37
USP11P51784 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
USP11P51784 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.36■□□□□ 0.37
USP11P51784 HLA-K-203ENST00000430151 1046 ntBASIC17.36■□□□□ 0.37
USP11P51784 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.36■□□□□ 0.37
USP11P51784 AL603764.1-201ENST00000636452 321 ntBASIC17.36■□□□□ 0.37
USP11P51784 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
USP11P51784 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 AP000845.1-201ENST00000581677 2131 ntBASIC17.36■□□□□ 0.37
USP11P51784 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
USP11P51784 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.36■□□□□ 0.37
USP11P51784 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.36■□□□□ 0.37
USP11P51784 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.36■□□□□ 0.37
USP11P51784 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
USP11P51784 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.36■□□□□ 0.37
USP11P51784 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
USP11P51784 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP11P51784 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP11P51784 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP11P51784 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP11P51784 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
USP11P51784 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
USP11P51784 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
USP11P51784 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP11P51784 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC17.35■□□□□ 0.37
USP11P51784 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.35■□□□□ 0.37
USP11P51784 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.35■□□□□ 0.37
USP11P51784 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.35■□□□□ 0.37
USP11P51784 U91328.1-201ENST00000437528 223 ntBASIC17.35■□□□□ 0.37
USP11P51784 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC17.35■□□□□ 0.37
USP11P51784 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.35■□□□□ 0.37
USP11P51784 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP11P51784 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.35■□□□□ 0.37
USP11P51784 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
USP11P51784 AC239800.4-201ENST00000603712 296 ntBASIC17.35■□□□□ 0.37
USP11P51784 AL022328.1-201ENST00000610050 478 ntBASIC17.35■□□□□ 0.37
USP11P51784 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.35■□□□□ 0.37
USP11P51784 KRT8P35-201ENST00000483942 1338 ntBASIC17.35■□□□□ 0.37
USP11P51784 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.35■□□□□ 0.37
USP11P51784 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP11P51784 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP11P51784 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
USP11P51784 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP11P51784 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP11P51784 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP11P51784 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP11P51784 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP11P51784 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
USP11P51784 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.35■□□□□ 0.37
USP11P51784 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP11P51784 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.35■□□□□ 0.37
USP11P51784 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.35■□□□□ 0.37
USP11P51784 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP11P51784 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.34■□□□□ 0.37
USP11P51784 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP11P51784 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
USP11P51784 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
USP11P51784 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP11P51784 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP11P51784 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP11P51784 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP11P51784 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP11P51784 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms