Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC12.9□□□□□ -0.34
HOXA1P49639 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
HOXA1P49639 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC12.9□□□□□ -0.34
HOXA1P49639 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 AC073439.1-201ENST00000624121 1774 ntBASIC12.9□□□□□ -0.34
HOXA1P49639 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
HOXA1P49639 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC12.9□□□□□ -0.34
HOXA1P49639 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC12.9□□□□□ -0.34
HOXA1P49639 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC12.9□□□□□ -0.34
HOXA1P49639 EMBP1-201ENST00000458200 901 ntBASIC12.9□□□□□ -0.34
HOXA1P49639 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC12.9□□□□□ -0.34
HOXA1P49639 RPL28-209ENST00000560055 670 ntTSL 3 BASIC12.9□□□□□ -0.34
HOXA1P49639 CD7-202ENST00000578509 925 ntTSL 3 BASIC12.9□□□□□ -0.34
HOXA1P49639 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC12.9□□□□□ -0.34
HOXA1P49639 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC12.9□□□□□ -0.34
HOXA1P49639 MIR4321-201ENST00000592276 80 ntBASIC12.9□□□□□ -0.34
HOXA1P49639 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
HOXA1P49639 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC12.9□□□□□ -0.34
HOXA1P49639 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC12.9□□□□□ -0.34
HOXA1P49639 AP001972.5-201ENST00000624624 2338 ntBASIC12.9□□□□□ -0.34
HOXA1P49639 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
HOXA1P49639 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
HOXA1P49639 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC12.9□□□□□ -0.34
HOXA1P49639 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
HOXA1P49639 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
HOXA1P49639 CPEB4-208ENST00000520867 2607 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
HOXA1P49639 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC12.9□□□□□ -0.35
HOXA1P49639 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
HOXA1P49639 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC12.89□□□□□ -0.35
HOXA1P49639 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC12.89□□□□□ -0.35
HOXA1P49639 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC12.89□□□□□ -0.35
HOXA1P49639 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC12.89□□□□□ -0.35
HOXA1P49639 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 AP000845.1-201ENST00000581677 2131 ntBASIC12.89□□□□□ -0.35
HOXA1P49639 PEG13-201ENST00000631594 5667 ntBASIC12.89□□□□□ -0.35
HOXA1P49639 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 AC140479.7-201ENST00000636301 2332 ntBASIC12.89□□□□□ -0.35
HOXA1P49639 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 AC134407.2-201ENST00000625089 1978 ntBASIC12.89□□□□□ -0.35
HOXA1P49639 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
HOXA1P49639 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
HOXA1P49639 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 IPPK-202ENST00000375522 882 ntTSL 3 BASIC12.89□□□□□ -0.35
HOXA1P49639 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 DDT-204ENST00000404092 805 ntTSL 3 BASIC12.89□□□□□ -0.35
HOXA1P49639 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
HOXA1P49639 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
HOXA1P49639 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC12.89□□□□□ -0.35
HOXA1P49639 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC12.89□□□□□ -0.35
HOXA1P49639 AC098831.1-202ENST00000438821 336 ntBASIC12.89□□□□□ -0.35
HOXA1P49639 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
HOXA1P49639 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC12.89□□□□□ -0.35
HOXA1P49639 UNC93B7-201ENST00000509439 705 ntBASIC12.89□□□□□ -0.35
HOXA1P49639 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC12.89□□□□□ -0.35
HOXA1P49639 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC12.89□□□□□ -0.35
HOXA1P49639 THTPA-204ENST00000554970 569 ntTSL 4 BASIC12.89□□□□□ -0.35
HOXA1P49639 THTPA-206ENST00000556015 535 ntTSL 3 BASIC12.89□□□□□ -0.35
HOXA1P49639 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC12.89□□□□□ -0.35
HOXA1P49639 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC12.89□□□□□ -0.35
HOXA1P49639 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
HOXA1P49639 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms