Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 OR2I1P-209ENST00000641730 5365 ntBASIC11.82□□□□□ -0.52
HLA-DMBP28068 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 RPL30-202ENST00000396070 440 ntTSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 HLA-DRB6-201ENST00000411500 1235 ntBASIC11.82□□□□□ -0.52
HLA-DMBP28068 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 TARDBPP1-201ENST00000442013 1203 ntBASIC11.82□□□□□ -0.52
HLA-DMBP28068 SPDYE14P-201ENST00000442619 822 ntBASIC11.82□□□□□ -0.52
HLA-DMBP28068 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 GATD1-206ENST00000526325 756 ntTSL 5 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 RN7SL828P-201ENST00000607615 303 ntBASIC11.82□□□□□ -0.52
HLA-DMBP28068 AL133215.2-201ENST00000609242 977 ntBASIC11.82□□□□□ -0.52
HLA-DMBP28068 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 Z92544.3-201ENST00000624747 417 ntBASIC11.82□□□□□ -0.52
HLA-DMBP28068 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
HLA-DMBP28068 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HLA-DMBP28068 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 AC084364.1-201ENST00000551967 1556 ntBASIC11.81□□□□□ -0.52
HLA-DMBP28068 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 MIR770-201ENST00000390219 98 ntBASIC11.81□□□□□ -0.52
HLA-DMBP28068 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 SYS1-203ENST00000414310 795 ntTSL 3 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 CNN2P2-201ENST00000443536 909 ntBASIC11.81□□□□□ -0.52
HLA-DMBP28068 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 CNN2P3-201ENST00000450201 906 ntBASIC11.81□□□□□ -0.52
HLA-DMBP28068 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 AC067863.1-201ENST00000494933 530 ntBASIC11.81□□□□□ -0.52
HLA-DMBP28068 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 VPS29-207ENST00000549970 818 ntTSL 3 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 AC026150.2-201ENST00000564693 1156 ntBASIC11.81□□□□□ -0.52
HLA-DMBP28068 LITAF-210ENST00000571976 548 ntTSL 2 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 LITAF-214ENST00000574703 486 ntTSL 2 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 MIR4453-201ENST00000584019 89 ntBASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms