Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
VIMP08670 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
VIMP08670 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
VIMP08670 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VIMP08670 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
VIMP08670 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
VIMP08670 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
VIMP08670 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.09
VIMP08670 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
VIMP08670 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VIMP08670 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VIMP08670 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.58■□□□□ 0.08
VIMP08670 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC15.58■□□□□ 0.08
VIMP08670 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
VIMP08670 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.58■□□□□ 0.08
VIMP08670 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
VIMP08670 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.58■□□□□ 0.08
VIMP08670 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
VIMP08670 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VIMP08670 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
VIMP08670 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
VIMP08670 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VIMP08670 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VIMP08670 SCARNA2-201ENST00000458748 420 ntBASIC15.58■□□□□ 0.08
VIMP08670 AC136632.2-201ENST00000512891 861 ntBASIC15.58■□□□□ 0.08
VIMP08670 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VIMP08670 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.58■□□□□ 0.08
VIMP08670 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.58■□□□□ 0.08
VIMP08670 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VIMP08670 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VIMP08670 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
VIMP08670 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VIMP08670 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
VIMP08670 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
VIMP08670 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.58■□□□□ 0.08
VIMP08670 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
VIMP08670 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
VIMP08670 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.58■□□□□ 0.08
VIMP08670 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC15.58■□□□□ 0.08
VIMP08670 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VIMP08670 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
VIMP08670 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
VIMP08670 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VIMP08670 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
VIMP08670 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
VIMP08670 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.57■□□□□ 0.08
VIMP08670 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.57■□□□□ 0.08
VIMP08670 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.57■□□□□ 0.08
VIMP08670 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC15.57■□□□□ 0.08
VIMP08670 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC15.57■□□□□ 0.08
VIMP08670 RET-205ENST00000615310 4337 ntTSL 5 BASIC15.57■□□□□ 0.08
VIMP08670 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
VIMP08670 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC15.57■□□□□ 0.08
VIMP08670 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.57■□□□□ 0.08
VIMP08670 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.57■□□□□ 0.08
VIMP08670 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC15.57■□□□□ 0.08
VIMP08670 ISCU-203ENST00000431221 799 ntTSL 2 BASIC15.57■□□□□ 0.08
VIMP08670 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.57■□□□□ 0.08
VIMP08670 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC15.57■□□□□ 0.08
VIMP08670 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.57■□□□□ 0.08
VIMP08670 OR7E47P-204ENST00000575924 449 ntBASIC15.57■□□□□ 0.08
VIMP08670 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
VIMP08670 AL450472.2-201ENST00000603663 1156 ntBASIC15.57■□□□□ 0.08
VIMP08670 AC008608.2-201ENST00000606089 416 ntBASIC15.57■□□□□ 0.08
VIMP08670 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.57■□□□□ 0.08
VIMP08670 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.57■□□□□ 0.08
VIMP08670 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.57■□□□□ 0.08
VIMP08670 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.57■□□□□ 0.08
VIMP08670 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC15.57■□□□□ 0.08
VIMP08670 AC107918.4-202ENST00000641623 219 ntBASIC15.57■□□□□ 0.08
VIMP08670 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.57■□□□□ 0.08
VIMP08670 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
VIMP08670 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.57■□□□□ 0.08
VIMP08670 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
VIMP08670 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VIMP08670 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC15.56■□□□□ 0.08
VIMP08670 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms