Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RB1P06400 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
RB1P06400 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RB1P06400 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
RB1P06400 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.15■□□□□ 0.18
RB1P06400 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.14■□□□□ 0.17
RB1P06400 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
RB1P06400 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
RB1P06400 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
RB1P06400 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
RB1P06400 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.14■□□□□ 0.17
RB1P06400 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
RB1P06400 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.14■□□□□ 0.17
RB1P06400 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.14■□□□□ 0.17
RB1P06400 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 RPL5P21-201ENST00000404620 815 ntBASIC16.14■□□□□ 0.17
RB1P06400 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
RB1P06400 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 CMC1-204ENST00000423894 549 ntTSL 2 BASIC16.14■□□□□ 0.17
RB1P06400 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.14■□□□□ 0.17
RB1P06400 AC069218.1-201ENST00000435269 762 ntBASIC16.14■□□□□ 0.17
RB1P06400 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC16.14■□□□□ 0.17
RB1P06400 LY6E-208ENST00000520531 490 ntTSL 2 BASIC16.14■□□□□ 0.17
RB1P06400 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 IQSEC3P1-201ENST00000538799 536 ntBASIC16.14■□□□□ 0.17
RB1P06400 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC16.14■□□□□ 0.17
RB1P06400 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.14■□□□□ 0.17
RB1P06400 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC16.14■□□□□ 0.17
RB1P06400 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC16.14■□□□□ 0.17
RB1P06400 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 AC020922.3-201ENST00000595064 547 ntBASIC16.14■□□□□ 0.17
RB1P06400 AL136301.1-201ENST00000615830 422 ntBASIC16.14■□□□□ 0.17
RB1P06400 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC16.14■□□□□ 0.17
RB1P06400 AC006453.1-201ENST00000636037 1257 ntBASIC16.14■□□□□ 0.17
RB1P06400 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RB1P06400 AL596087.1-201ENST00000400979 1969 ntBASIC16.14■□□□□ 0.17
RB1P06400 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RB1P06400 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
RB1P06400 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
RB1P06400 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RB1P06400 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
RB1P06400 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.14■□□□□ 0.17
RB1P06400 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 AL118508.1-201ENST00000613502 2345 ntBASIC16.13■□□□□ 0.17
RB1P06400 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC16.13■□□□□ 0.17
RB1P06400 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.13■□□□□ 0.17
RB1P06400 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
RB1P06400 RN7SKP214-201ENST00000364208 315 ntBASIC16.13■□□□□ 0.17
RB1P06400 AC104784.1-201ENST00000473096 294 ntBASIC16.13■□□□□ 0.17
RB1P06400 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC16.13■□□□□ 0.17
RB1P06400 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
RB1P06400 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC16.13■□□□□ 0.17
RB1P06400 CFL1-214ENST00000534769 758 ntTSL 2 BASIC16.13■□□□□ 0.17
RB1P06400 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.13■□□□□ 0.17
RB1P06400 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC16.13■□□□□ 0.17
RB1P06400 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC16.13■□□□□ 0.17
RB1P06400 MIR3147-201ENST00000577811 66 ntBASIC16.13■□□□□ 0.17
RB1P06400 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 AC009955.4-201ENST00000597192 544 ntBASIC16.13■□□□□ 0.17
RB1P06400 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC16.13■□□□□ 0.17
RB1P06400 PCBP2-OT1-201ENST00000634357 590 ntBASIC16.13■□□□□ 0.17
RB1P06400 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.13■□□□□ 0.17
RB1P06400 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
RB1P06400 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RB1P06400 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC16.13■□□□□ 0.17
RB1P06400 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.13■□□□□ 0.17
RB1P06400 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
RB1P06400 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.13■□□□□ 0.17
RB1P06400 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms