Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDNEP1O95476 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 NID2-208ENST00000617139 3827 ntTSL 5 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CTDNEP1O95476 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDNEP1O95476 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDNEP1O95476 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDNEP1O95476 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDNEP1O95476 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDNEP1O95476 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDNEP1O95476 AC018442.1-201ENST00000421439 2061 ntBASIC17.78■□□□□ 0.44
CTDNEP1O95476 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 AC005912.2-201ENST00000619492 2400 ntBASIC17.78■□□□□ 0.44
CTDNEP1O95476 AC068418.2-201ENST00000577309 3703 ntBASIC17.78■□□□□ 0.44
CTDNEP1O95476 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDNEP1O95476 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CTDNEP1O95476 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CTDNEP1O95476 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDNEP1O95476 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDNEP1O95476 MPV17-208ENST00000405076 603 ntTSL 5 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 MEP1AP4-201ENST00000423244 1087 ntBASIC17.78■□□□□ 0.44
CTDNEP1O95476 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 GALT-202ENST00000450095 1280 ntTSL 2 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 API5-211ENST00000534695 560 ntTSL 5 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 SPCS2P1-201ENST00000561636 679 ntBASIC17.78■□□□□ 0.44
CTDNEP1O95476 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDNEP1O95476 AC009118.2-201ENST00000613275 655 ntBASIC17.78■□□□□ 0.44
CTDNEP1O95476 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDNEP1O95476 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDNEP1O95476 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDNEP1O95476 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 AC007686.3-201ENST00000619017 3487 ntBASIC17.78■□□□□ 0.44
CTDNEP1O95476 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
CTDNEP1O95476 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDNEP1O95476 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDNEP1O95476 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDNEP1O95476 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CTDNEP1O95476 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CTDNEP1O95476 AC007191.1-201ENST00000623179 2995 ntBASIC17.77■□□□□ 0.44
CTDNEP1O95476 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC17.77■□□□□ 0.44
CTDNEP1O95476 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC17.77■□□□□ 0.44
CTDNEP1O95476 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDNEP1O95476 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDNEP1O95476 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.77■□□□□ 0.44
CTDNEP1O95476 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDNEP1O95476 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDNEP1O95476 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDNEP1O95476 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC17.77■□□□□ 0.44
CTDNEP1O95476 AC092552.1-201ENST00000547243 906 ntBASIC17.77■□□□□ 0.44
CTDNEP1O95476 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
CTDNEP1O95476 AC120045.2-201ENST00000567334 178 ntBASIC17.77■□□□□ 0.44
CTDNEP1O95476 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.77■□□□□ 0.44
CTDNEP1O95476 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.77■□□□□ 0.44
CTDNEP1O95476 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC17.77■□□□□ 0.44
CTDNEP1O95476 SPDYE22P-201ENST00000582158 798 ntBASIC17.77■□□□□ 0.44
CTDNEP1O95476 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CTDNEP1O95476 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.77■□□□□ 0.44
CTDNEP1O95476 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC17.77■□□□□ 0.44
CTDNEP1O95476 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.44
CTDNEP1O95476 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDNEP1O95476 AL137783.1-201ENST00000623494 1896 ntBASIC17.77■□□□□ 0.43
CTDNEP1O95476 INTS4P2-202ENST00000614726 2019 ntBASIC17.77■□□□□ 0.43
CTDNEP1O95476 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CTDNEP1O95476 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CTDNEP1O95476 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CTDNEP1O95476 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.77■□□□□ 0.43
CTDNEP1O95476 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CTDNEP1O95476 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.77■□□□□ 0.43
CTDNEP1O95476 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
CTDNEP1O95476 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CTDNEP1O95476 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CTDNEP1O95476 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CTDNEP1O95476 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.76■□□□□ 0.43
CTDNEP1O95476 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CTDNEP1O95476 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
CTDNEP1O95476 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.76■□□□□ 0.43
CTDNEP1O95476 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
CTDNEP1O95476 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTDNEP1O95476 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms