Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC19.43■□□□□ 0.7
NPHP1O15259 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 PTPA-218ENST00000435132 618 ntTSL 2 BASIC19.43■□□□□ 0.7
NPHP1O15259 AC004898.1-201ENST00000451057 766 ntBASIC19.43■□□□□ 0.7
NPHP1O15259 RPSAP36-202ENST00000494591 1261 ntBASIC19.43■□□□□ 0.7
NPHP1O15259 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC19.43■□□□□ 0.7
NPHP1O15259 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC19.43■□□□□ 0.7
NPHP1O15259 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC19.43■□□□□ 0.7
NPHP1O15259 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC19.43■□□□□ 0.7
NPHP1O15259 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC19.43■□□□□ 0.7
NPHP1O15259 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC19.43■□□□□ 0.7
NPHP1O15259 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC19.43■□□□□ 0.7
NPHP1O15259 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC19.43■□□□□ 0.7
NPHP1O15259 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC19.43■□□□□ 0.7
NPHP1O15259 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
NPHP1O15259 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
NPHP1O15259 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
NPHP1O15259 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPHP1O15259 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
NPHP1O15259 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.42■□□□□ 0.7
NPHP1O15259 AC138028.6-201ENST00000616106 1482 ntBASIC19.42■□□□□ 0.7
NPHP1O15259 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPHP1O15259 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC19.42■□□□□ 0.7
NPHP1O15259 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPHP1O15259 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NPHP1O15259 AP003680.1-201ENST00000598970 3660 ntBASIC19.42■□□□□ 0.7
NPHP1O15259 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPHP1O15259 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NPHP1O15259 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
NPHP1O15259 KLF2P2-201ENST00000416807 1039 ntBASIC19.42■□□□□ 0.7
NPHP1O15259 AC005077.2-201ENST00000449786 690 ntBASIC19.42■□□□□ 0.7
NPHP1O15259 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC19.42■□□□□ 0.7
NPHP1O15259 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC19.42■□□□□ 0.7
NPHP1O15259 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC19.42■□□□□ 0.7
NPHP1O15259 RN7SL190P-201ENST00000582519 257 ntBASIC19.42■□□□□ 0.7
NPHP1O15259 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NPHP1O15259 UBL5-208ENST00000593087 320 ntTSL 3 BASIC19.42■□□□□ 0.7
NPHP1O15259 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
NPHP1O15259 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.42■□□□□ 0.7
NPHP1O15259 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
NPHP1O15259 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NPHP1O15259 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC19.42■□□□□ 0.7
NPHP1O15259 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPHP1O15259 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPHP1O15259 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.42■□□□□ 0.7
NPHP1O15259 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NPHP1O15259 MYB-201ENST00000316528 3571 ntTSL 5 BASIC19.42■□□□□ 0.7
NPHP1O15259 MYB-241ENST00000616088 3573 ntTSL 5 BASIC19.42■□□□□ 0.7
NPHP1O15259 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
NPHP1O15259 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.41■□□□□ 0.7
NPHP1O15259 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 RNU1-114P-201ENST00000365297 166 ntBASIC19.41■□□□□ 0.7
NPHP1O15259 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC19.41■□□□□ 0.7
NPHP1O15259 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC19.41■□□□□ 0.7
NPHP1O15259 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC19.41■□□□□ 0.7
NPHP1O15259 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC19.41■□□□□ 0.7
NPHP1O15259 AC091804.1-201ENST00000486888 567 ntBASIC19.41■□□□□ 0.7
NPHP1O15259 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC19.41■□□□□ 0.7
NPHP1O15259 RNA5SP423-201ENST00000517127 109 ntBASIC19.41■□□□□ 0.7
NPHP1O15259 CYGB-203ENST00000589145 788 ntTSL 3 BASIC19.41■□□□□ 0.7
NPHP1O15259 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC19.41■□□□□ 0.7
NPHP1O15259 AC106872.11-201ENST00000605838 421 ntBASIC19.41■□□□□ 0.7
NPHP1O15259 AL096828.3-201ENST00000615354 462 ntBASIC19.41■□□□□ 0.7
NPHP1O15259 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC19.41■□□□□ 0.7
NPHP1O15259 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
NPHP1O15259 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
NPHP1O15259 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms