Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
USP28Q96RU2 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP28Q96RU2 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
USP28Q96RU2 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP28Q96RU2 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP28Q96RU2 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP28Q96RU2 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP28Q96RU2 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC17.65■□□□□ 0.42
USP28Q96RU2 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP28Q96RU2 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
USP28Q96RU2 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP28Q96RU2 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
USP28Q96RU2 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
USP28Q96RU2 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.64■□□□□ 0.41
USP28Q96RU2 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
USP28Q96RU2 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
USP28Q96RU2 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.64■□□□□ 0.41
USP28Q96RU2 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
USP28Q96RU2 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
USP28Q96RU2 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 MIR1233-2-201ENST00000408138 82 ntBASIC17.64■□□□□ 0.41
USP28Q96RU2 MIR1233-1-201ENST00000408722 82 ntBASIC17.64■□□□□ 0.41
USP28Q96RU2 TREML5P-201ENST00000421694 576 ntBASIC17.64■□□□□ 0.41
USP28Q96RU2 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.64■□□□□ 0.41
USP28Q96RU2 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.64■□□□□ 0.41
USP28Q96RU2 AC025678.2-201ENST00000562061 970 ntBASIC17.64■□□□□ 0.41
USP28Q96RU2 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.64■□□□□ 0.41
USP28Q96RU2 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
USP28Q96RU2 AL691403.2-201ENST00000618460 490 ntBASIC17.64■□□□□ 0.41
USP28Q96RU2 AC004461.2-201ENST00000629517 803 ntBASIC17.64■□□□□ 0.41
USP28Q96RU2 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
USP28Q96RU2 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
USP28Q96RU2 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC17.64■□□□□ 0.41
USP28Q96RU2 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC17.64■□□□□ 0.41
USP28Q96RU2 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
USP28Q96RU2 AC100757.3-201ENST00000622361 1406 ntBASIC17.64■□□□□ 0.41
USP28Q96RU2 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC17.64■□□□□ 0.41
USP28Q96RU2 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP28Q96RU2 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC17.63■□□□□ 0.41
USP28Q96RU2 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
USP28Q96RU2 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
USP28Q96RU2 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
USP28Q96RU2 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.63■□□□□ 0.41
USP28Q96RU2 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.63■□□□□ 0.41
USP28Q96RU2 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.63■□□□□ 0.41
USP28Q96RU2 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.63■□□□□ 0.41
USP28Q96RU2 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.63■□□□□ 0.41
USP28Q96RU2 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.63■□□□□ 0.41
USP28Q96RU2 ZNF890P-202ENST00000530367 1156 ntBASIC17.63■□□□□ 0.41
USP28Q96RU2 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.63■□□□□ 0.41
USP28Q96RU2 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.63■□□□□ 0.41
USP28Q96RU2 AL590560.3-201ENST00000623350 461 ntBASIC17.63■□□□□ 0.41
USP28Q96RU2 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.63■□□□□ 0.41
USP28Q96RU2 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.63■□□□□ 0.41
USP28Q96RU2 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.63■□□□□ 0.41
USP28Q96RU2 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC17.63■□□□□ 0.41
USP28Q96RU2 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.63■□□□□ 0.41
USP28Q96RU2 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
USP28Q96RU2 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.63■□□□□ 0.41
USP28Q96RU2 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP28Q96RU2 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.63■□□□□ 0.41
USP28Q96RU2 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC17.63■□□□□ 0.41
USP28Q96RU2 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
USP28Q96RU2 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms